Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   FXO11_RS04125 Genome accession   NZ_CP043042
Coordinates   929816..930883 (+) Length   355 a.a.
NCBI ID   WP_148861703.1    Uniprot ID   -
Organism   Marinobacter fonticola strain CS412     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 924816..935883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXO11_RS04110 rpmE 925222..925440 (+) 219 WP_148861700.1 50S ribosomal protein L31 -
  FXO11_RS04115 - 925788..927053 (+) 1266 WP_148861701.1 malic enzyme-like NAD(P)-binding protein -
  FXO11_RS04120 - 927185..929629 (-) 2445 WP_148861702.1 penicillin-binding protein 1A -
  FXO11_RS04125 pilM 929816..930883 (+) 1068 WP_148861703.1 pilus assembly protein PilM Machinery gene
  FXO11_RS04130 - 930883..931449 (+) 567 WP_148861704.1 PilN domain-containing protein -
  FXO11_RS04135 - 931446..932057 (+) 612 WP_148861705.1 type 4a pilus biogenesis protein PilO -
  FXO11_RS04140 - 932060..932611 (+) 552 WP_148861706.1 pilus assembly protein PilP -
  FXO11_RS04145 pilQ 932677..934737 (+) 2061 WP_202980284.1 type IV pilus secretin PilQ Machinery gene
  FXO11_RS04150 aroK 934870..935436 (+) 567 WP_148861708.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37906.93 Da        Isoelectric Point: 4.1415

>NTDB_id=380277 FXO11_RS04125 WP_148861703.1 929816..930883(+) (pilM) [Marinobacter fonticola strain CS412]
MFGLFGKKSSTVLGIDISSSSVKLLELSRLSGERYKVESYAVEPLPANAVVEKNITDVEAVGDALKKVASKARTGVKQAA
VAVSGSAVITKLIQMNGGINEFEMEDQIALEADQYIPYPLDEVAIDFEVQGPSETNPDQVDVLLAACRKENVDIREDALS
IAGLSAKVVDVEAYALERAYDLIEPQLDAQGEELVVAIVDVGATMTTLSVLAEGKTVYTREQIFGGKQLTEEIQRRYGLS
LEEAGLAKKQGGLPDDYDSEVLSPFREAVVQQVARALQFFFGASQYNAVDYVVLAGGTASIQGLTEMVEEKTGTATLVAN
PFADMAVGSRVNASALSNDAPSLMIACGLAMRSFD

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=380277 FXO11_RS04125 WP_148861703.1 929816..930883(+) (pilM) [Marinobacter fonticola strain CS412]
GTGTTCGGATTGTTCGGTAAAAAGTCCAGTACCGTTCTGGGCATCGACATCAGTTCAAGCTCGGTCAAGCTCCTGGAACT
CTCCAGGCTGAGTGGCGAGCGATATAAGGTGGAAAGTTATGCGGTCGAACCGCTGCCCGCCAATGCTGTAGTCGAAAAAA
ATATCACAGATGTTGAGGCGGTTGGCGATGCGCTGAAAAAGGTCGCAAGTAAAGCCCGCACCGGCGTGAAACAGGCGGCC
GTTGCTGTCTCCGGTTCGGCTGTTATTACCAAGCTGATCCAGATGAATGGTGGTATCAACGAGTTTGAAATGGAAGATCA
GATCGCGCTCGAGGCCGATCAGTACATTCCTTATCCTCTCGATGAAGTGGCTATTGATTTCGAAGTTCAAGGGCCTTCTG
AAACCAATCCCGATCAGGTCGACGTTCTTTTGGCAGCTTGCCGTAAGGAAAACGTCGATATTCGGGAGGATGCGCTCTCC
ATTGCAGGTCTTTCTGCCAAGGTCGTCGATGTCGAGGCCTATGCCCTCGAGCGGGCTTACGACCTTATCGAGCCCCAGTT
GGATGCCCAGGGCGAAGAGCTGGTTGTCGCTATCGTTGATGTCGGCGCGACCATGACAACGCTGAGTGTTCTCGCCGAAG
GCAAAACGGTATACACCCGCGAGCAGATCTTTGGCGGCAAGCAGTTGACCGAGGAAATTCAGCGTCGTTATGGCCTTTCT
CTCGAAGAGGCTGGTCTTGCCAAGAAACAAGGCGGTTTGCCGGACGACTATGACTCCGAGGTGTTGTCGCCCTTCCGGGA
AGCGGTTGTGCAGCAGGTTGCGCGCGCGTTGCAGTTCTTTTTCGGAGCCAGCCAGTACAACGCCGTCGATTACGTGGTGC
TTGCCGGCGGAACGGCCTCTATCCAGGGTTTGACCGAGATGGTGGAGGAAAAGACCGGGACCGCGACTTTAGTTGCCAAC
CCGTTCGCGGATATGGCGGTAGGCTCCCGCGTCAACGCGTCTGCACTGAGCAATGATGCGCCGTCGTTGATGATTGCCTG
TGGTCTGGCGATGAGGAGTTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-354)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

52.958

100

0.53
  comM Acinetobacter nosocomialis M2

52.958

100

0.53
  comM Acinetobacter baylyi ADP1

51.268

100

0.513
  pilM Legionella pneumophila strain ERS1305867

46.479

100

0.465

Multiple sequence alignment