NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	HB744_RS16135	Genome accession	NZ_CP050323
Coordinates	3403082..3403723 (+)	Length	213 a.a.
NCBI ID	WP_003098129.1	Uniprot ID	A0A0H2Z9P5
Organism	Pseudomonas aeruginosa strain DVT429
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3398082..3408723

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HB744_RS16125 (HB744_16180)	ltrA	3399845..3401548 (+)	1704	WP_031694129.1	group II intron reverse transcriptase/maturase	-
HB744_RS16130 (HB744_16185)	tig	3401678..3402988 (+)	1311	WP_003087920.1	trigger factor	-
HB744_RS16135 (HB744_16190)	clpP	3403082..3403723 (+)	642	WP_003098129.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
HB744_RS16140 (HB744_16195)	clpX	3403828..3405108 (+)	1281	WP_003087924.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
HB744_RS16145 (HB744_16200)	lon	3405240..3407636 (+)	2397	WP_174713091.1	endopeptidase La	-
HB744_RS16150 (HB744_16205)	hupB	3407772..3408044 (+)	273	WP_003087931.1	nucleoid-associated protein HU-beta	-

Sequence

Protein

Download Length: 213 a.a. Molecular weight: 23502.14 Da Isoelectric Point: 6.3772

                                >NTDB_id=378279 HB744_RS16135 WP_003098129.1 3403082..3403723(+) (clpP) [Pseudomonas aeruginosa strain DVT429]

MSRNSFIPHVPDIQAAGGLVPMVVEQSARGERAYDIYSRLLKERIIFLVGQVEDYMANLVVAQLLFLEAENPEKDIHLYI

NSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGALLLAGGAAGKRYCLPHSRMMIHQPLGGFQGQASDIEIHAKEIL

FIKERLNQILAHHTGQPLDVIARDTDRDRFMSGDEAVKYGLIDKVMTQRDLAV

Nucleotide

Download Length: 642 bp

                                >NTDB_id=378279 HB744_RS16135 WP_003098129.1 3403082..3403723(+) (clpP) [Pseudomonas aeruginosa strain DVT429]

ATGTCTCGCAACTCTTTTATTCCGCACGTTCCCGATATCCAGGCCGCCGGTGGCCTGGTGCCCATGGTGGTGGAGCAGTC

CGCCCGCGGCGAGCGAGCCTACGACATCTATTCGCGCCTGCTGAAGGAGCGGATCATCTTCCTGGTCGGCCAGGTCGAGG

ACTACATGGCCAACCTGGTGGTTGCCCAGTTGCTGTTCCTGGAGGCTGAAAATCCCGAGAAGGACATTCATCTCTACATC

AACTCGCCGGGTGGTTCGGTGACTGCCGGGATGTCCATCTACGACACCATGCAGTTCATCAAGCCCAACGTCTCGACCAC

CTGTATCGGCCAGGCGTGCAGCATGGGTGCCCTGCTGCTTGCGGGCGGTGCCGCCGGCAAGCGCTACTGCCTGCCGCATT

CGCGGATGATGATCCACCAGCCGCTGGGCGGTTTCCAGGGCCAGGCCTCGGATATCGAGATCCATGCCAAGGAAATCCTC

TTCATCAAGGAGCGTCTGAACCAGATCCTGGCGCACCACACCGGCCAGCCCCTGGACGTCATTGCCCGCGATACCGATCG

TGACCGCTTCATGAGCGGTGACGAAGCCGTCAAGTATGGCCTGATCGACAAGGTCATGACCCAGCGCGACCTGGCCGTCT

AA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(29-208)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A0H2Z9P5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	67.708	90.141	0.61
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	65.789	89.202	0.587
clpP	Lactococcus lactis subsp. cremoris KW2	53.299	92.488	0.493
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	51.777	92.488	0.479
clpP	Streptococcus mutans UA159	50.51	92.019	0.465
clpP	Streptococcus pneumoniae R6	50.769	91.549	0.465
clpP	Streptococcus pneumoniae TIGR4	50.769	91.549	0.465
clpP	Streptococcus pyogenes JRS4	50.769	91.549	0.465
clpP	Streptococcus pyogenes MGAS315	50.769	91.549	0.465
clpP	Streptococcus thermophilus LMG 18311	50.769	91.549	0.465
clpP	Streptococcus thermophilus LMD-9	50.769	91.549	0.465
clpP	Streptococcus pneumoniae Rx1	50.769	91.549	0.465
clpP	Streptococcus pneumoniae D39	50.769	91.549	0.465

Detailed information NTG0378279