NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	HB747_RS29060	Genome accession	NZ_CP050322
Coordinates	6235374..6236867 (+)	Length	497 a.a.
NCBI ID	WP_023114980.1	Uniprot ID	-
Organism	Pseudomonas aeruginosa strain DVT729
Function	require for natural transformation (predicted from homology) Unclear

Genomic Context

Location: 6230374..6241867

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HB747_RS30785	-	6230518..6230649 (-)	132	WP_256717723.1	hypothetical protein	-
HB747_RS29030 (HB747_29070)	-	6230646..6231431 (-)	786	WP_174707658.1	fimbrial protein	-
HB747_RS29035 (HB747_29075)	sutA	6231846..6232163 (-)	318	WP_003098240.1	transcriptional regulator SutA	-
HB747_RS29040 (HB747_29080)	-	6232241..6232666 (-)	426	WP_003096441.1	secondary thiamine-phosphate synthase enzyme YjbQ	-
HB747_RS29045 (HB747_29085)	-	6232927..6234255 (-)	1329	WP_003109815.1	ammonium transporter	-
HB747_RS29050 (HB747_29090)	glnK	6234295..6234633 (-)	339	WP_003096476.1	P-II family nitrogen regulator	-
HB747_RS29055 (HB747_29095)	-	6235073..6235333 (+)	261	WP_003096478.1	accessory factor UbiK family protein	-
HB747_RS29060 (HB747_29100)	comM	6235374..6236867 (+)	1494	WP_023114980.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
HB747_RS29065 (HB747_29105)	betT	6236992..6238979 (+)	1988	Protein_5762	choline BCCT transporter BetT	-
HB747_RS29070 (HB747_29110)	pchP	6239022..6240071 (-)	1050	WP_023088685.1	phosphorylcholine phosphatase	-
HB747_RS29075 (HB747_29115)	-	6240222..6241139 (-)	918	WP_003161164.1	LysR substrate-binding domain-containing protein	-

Sequence

Protein

Download Length: 497 a.a. Molecular weight: 53171.14 Da Isoelectric Point: 7.7575

                                >NTDB_id=378204 HB747_RS29060 WP_023114980.1 6235374..6236867(+) (comM) [Pseudomonas aeruginosa strain DVT729]

MSLAIVHSRAQVGVEAPCVSVEAHLANGLPSLTLVGLPETAVRESKDRVRSALLNAGFDFPARRITLNLAPADLPKDGGR

FDLAIALGILAASGQLPGTALDGLECLGELALSGAIRPVRGVLPAALAARDARRVLVVPKENAEEASLASGLTVFAVDHL

LEIAGHLSGQAPLLPYQARGLLRAPFPYPDLAEVQGQAAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPALDE

DEALEVAAIHSVASHVPLRHWPQRPFRQPHHSASAPALVGGGSRPQPGEITLAHQGVLFLDELPEFERKVLEVLREPLES

GEIVIARANDRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQVQRYRGKLSGPLLDRIDLHVSVLRESTSLQPGHGE

TATAEISERVGAARQRQLARQGCANAHLDLQAMHRNCALAEADRRWLEAAGERLELSLRALHRILKVARTLADLERIDAI

ERRHLAEALQYRAMTST

Nucleotide

Download Length: 1494 bp

                                >NTDB_id=378204 HB747_RS29060 WP_023114980.1 6235374..6236867(+) (comM) [Pseudomonas aeruginosa strain DVT729]

ATGTCCCTGGCGATTGTCCACAGCCGAGCCCAGGTCGGCGTCGAAGCCCCCTGCGTCAGCGTCGAGGCGCACCTGGCCAA

CGGCCTGCCTTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGCGTGCGCAGCGCCCTGC

TCAATGCCGGTTTCGACTTCCCCGCGCGGCGCATCACCCTCAACCTCGCCCCCGCCGACCTACCCAAGGACGGCGGTCGC

TTCGACCTGGCCATCGCACTCGGCATCCTCGCCGCCAGCGGCCAGTTGCCCGGCACCGCCCTCGACGGCCTGGAGTGCCT

CGGCGAACTGGCCCTGTCCGGGGCGATCCGGCCAGTGCGAGGCGTATTGCCGGCCGCGCTGGCGGCGCGCGACGCAAGGC

GCGTTCTGGTGGTACCGAAGGAAAATGCCGAAGAGGCCAGCCTGGCCAGCGGGCTGACGGTGTTCGCCGTGGACCACCTG

CTGGAGATCGCCGGACACCTCTCCGGCCAGGCCCCGCTGCTGCCCTACCAGGCCCGCGGCCTGCTCCGCGCGCCCTTCCC

TTATCCAGACCTGGCCGAGGTCCAGGGCCAGGCCGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCGCACAACC

TGTTGCTCAGCGGCCCGCCGGGCACCGGCAAGACCCTCCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGGCGCTCGACGAG

GACGAGGCCCTGGAGGTCGCAGCGATCCATTCGGTGGCCAGCCACGTCCCCCTCAGGCACTGGCCGCAGCGACCGTTCCG

CCAGCCGCACCACTCCGCCTCCGCGCCGGCCCTGGTCGGCGGCGGCAGCCGCCCGCAGCCGGGCGAGATCACCCTGGCGC

ACCAGGGCGTGCTGTTCCTCGACGAACTGCCGGAGTTCGAGCGCAAGGTCCTGGAGGTCCTGCGCGAGCCGCTGGAAAGC

GGCGAGATCGTCATTGCCCGGGCCAACGACCGGGTACGTTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAATCCCTG

TCCCTGTGGCTACCTCGGCGATCCCAGCGGCCGCTGCCGCTGCACCCCGGAACAGGTCCAGCGCTACCGGGGCAAGCTGT

CCGGACCGCTGCTCGATCGCATCGACCTGCACGTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCAGGACACGGCGAA

ACCGCTACCGCCGAGATCAGCGAACGGGTTGGCGCCGCACGGCAACGGCAACTGGCCCGCCAGGGCTGCGCCAATGCCCA

TCTCGACCTCCAGGCGATGCACCGCAATTGTGCACTCGCCGAAGCGGACCGCCGCTGGCTGGAGGCTGCCGGAGAGCGCC

TGGAACTTTCCTTGCGCGCCTTGCATCGCATACTCAAGGTGGCCCGGACGCTGGCCGACCTGGAGCGCATCGATGCCATC

GAACGCCGGCACCTGGCGGAAGCCCTGCAGTATCGGGCAATGACCTCCACGTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Haemophilus influenzae Rd KW20	55.446	100	0.563
comM	Vibrio campbellii strain DS40M4	56.338	100	0.563
comM	Vibrio cholerae O1 biovar El Tor strain E7946	55.936	100	0.559
comM	Vibrio cholerae strain A1552	55.936	100	0.559
comM	Glaesserella parasuis strain SC1401	54.781	100	0.553
comM	Acinetobacter baylyi ADP1	53.414	100	0.535
comM	Legionella pneumophila str. Paris	49.901	100	0.507
comM	Legionella pneumophila strain ERS1305867	49.901	100	0.507
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.063	100	0.471
comM	Helicobacter pylori 26695	39.044	100	0.394

Detailed information NTG0378204