Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FO488_RS17575 Genome accession   NZ_CP042466
Coordinates   3735715..3736143 (-) Length   142 a.a.
NCBI ID   WP_149211752.1    Uniprot ID   A0A5C1MGT2
Organism   Geobacter sp. FeAm09     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3730715..3741143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FO488_RS17550 (FO488_17550) - 3731166..3732305 (-) 1140 WP_149211748.1 aldo/keto reductase -
  FO488_RS17555 (FO488_17555) - 3732368..3733426 (-) 1059 WP_149211749.1 NAD(P)-dependent alcohol dehydrogenase -
  FO488_RS17560 (FO488_17560) - 3733800..3734207 (-) 408 WP_149211750.1 cupin domain-containing protein -
  FO488_RS17565 (FO488_17565) - 3734260..3735246 (-) 987 WP_149211751.1 aldo/keto reductase -
  FO488_RS17575 (FO488_17575) ssb 3735715..3736143 (-) 429 WP_149211752.1 single-stranded DNA-binding protein Machinery gene
  FO488_RS17580 (FO488_17580) - 3736895..3739246 (+) 2352 WP_168206090.1 fibronectin type III domain-containing protein -
  FO488_RS17585 (FO488_17585) gpmI 3739453..3740984 (+) 1532 Protein_3534 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15896.73 Da        Isoelectric Point: 5.3261

>NTDB_id=378025 FO488_RS17575 WP_149211752.1 3735715..3736143(-) (ssb) [Geobacter sp. FeAm09]
MASLNKVMLIGNLGKDPEVRYTPSGAAVASFNLATSERFKNKSGEWEERTEWHRVTLWSKLAEIAGEYLSKGKTVYIEGR
LQTRKWQDNSGNERYTTEIVGEKMQMLSPKGEGRRGGDVTSEPVHGGGGFEEPPFQDDDIPF

Nucleotide


Download         Length: 429 bp        

>NTDB_id=378025 FO488_RS17575 WP_149211752.1 3735715..3736143(-) (ssb) [Geobacter sp. FeAm09]
ATGGCAAGCCTGAACAAGGTCATGCTGATAGGAAATCTGGGCAAGGATCCGGAAGTGCGCTATACCCCGTCCGGGGCTGC
CGTCGCCAGCTTCAATCTGGCCACCAGCGAACGCTTCAAGAACAAGAGCGGCGAATGGGAAGAGCGTACCGAATGGCACC
GGGTCACCCTCTGGTCGAAGCTGGCCGAGATCGCCGGCGAATACCTCTCCAAGGGGAAGACCGTTTACATCGAGGGGCGC
CTGCAGACCCGCAAGTGGCAGGACAACAGCGGCAATGAACGCTACACCACCGAGATCGTCGGCGAAAAGATGCAGATGCT
CTCCCCCAAGGGTGAAGGACGCCGGGGCGGCGACGTGACCTCGGAGCCGGTACATGGCGGGGGGGGATTCGAAGAGCCGC
CGTTCCAGGATGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C1MGT2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.18

100

0.634
  ssb Neisseria gonorrhoeae MS11

54.783

80.986

0.444
  ssb Neisseria meningitidis MC58

54.783

80.986

0.444
  ssb Glaesserella parasuis strain SC1401

53.509

80.282

0.43
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.26

100

0.43
  ssb Latilactobacillus sakei subsp. sakei 23K

30.994

100

0.373

Multiple sequence alignment