Detailed information NTG0377027

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: HBA47_RS01610
• Genome accession: NZ_CP050136
• Coordinates: 314224..314841 (-)
• Length: 205 a.a.
• NCBI ID: WP_003787357.1
• Uniprot ID: F5S7Y1
• Organism: Kingella kingae strain ATCC 23332
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 309224..319841

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HBA47_RS01585 (HBA47_01590)	-	310026..310343 (+)	318	WP_019389730.1	hypothetical protein	-
HBA47_RS01590 (HBA47_01595)	msrAB	310442..312016 (+)	1575	WP_019389729.1	bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	-
HBA47_RS01595 (HBA47_01600)	-	312095..313039 (-)	945	WP_019389728.1	class I SAM-dependent methyltransferase	-
HBA47_RS01600 (HBA47_01605)	-	313135..313755 (-)	621	WP_003787352.1	LysE family translocator	-
HBA47_RS01605 (HBA47_01610)	-	313762..314139 (-)	378	WP_003789241.1	hypothetical protein	-
HBA47_RS01610 (HBA47_01615)	clpP	314224..314841 (-)	618	WP_003787357.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
HBA47_RS01615 (HBA47_01620)	-	314891..315724 (-)	834	WP_019389726.1	transporter associated domain-containing protein	-
HBA47_RS01620 (HBA47_01625)	ybeY	315764..316276 (-)	513	WP_019389725.1	rRNA maturation RNase YbeY	-
HBA47_RS01625 (HBA47_01630)	-	316342..317553 (-)	1212	WP_019389724.1	MFS transporter	-
HBA47_RS01640 (HBA47_01645)	-	317893..319284 (+)	1392	WP_019389723.1	3'-5' exonuclease	-

Sequence

Protein

• Length: 205 a.a.
• Molecular weight: 22654.02 Da
• Isoelectric Point: 5.0776

>NTDB_id=377027 HBA47_RS01610 WP_003787357.1 314224..314841(-) (clpP) [Kingella kingae strain ATCC 23332]
MLDIQNNTLIPTVIEQSGRGERAFDIYSRLLKERIIFLVGPVNDQTANLVVAQMLFLESENPDKDIYFYINSPGGSVTAG
MSIYDTMKFIKPDVQTLCLGQAASMGAFLLSAGTKGKRFALPNSRVMIHQPLISGGLGGQASDIEIHARELLKLKEKLNQ
MLAEHTGKTLAEVERDTDRDNFMSAQEAMEYGLIDKVITSRNEVA

Nucleotide

• Length: 618 bp

>NTDB_id=377027 HBA47_RS01610 WP_003787357.1 314224..314841(-) (clpP) [Kingella kingae strain ATCC 23332]
ATGTTAGACATTCAAAACAACACCTTAATCCCCACCGTGATTGAACAAAGCGGACGCGGCGAACGCGCTTTTGACATTTA
TTCACGCCTGTTAAAAGAGCGCATTATTTTCTTGGTGGGCCCTGTGAACGACCAAACCGCCAATTTGGTTGTGGCGCAAA
TGCTGTTTTTGGAAAGCGAAAACCCCGACAAAGACATTTATTTTTACATCAATAGCCCAGGTGGCAGCGTAACCGCAGGC
ATGAGCATTTATGACACGATGAAATTCATTAAACCCGATGTGCAAACTTTGTGCTTGGGTCAAGCGGCGAGCATGGGCGC
GTTTTTGCTGTCGGCTGGCACAAAAGGCAAGCGTTTCGCCCTGCCCAATAGCCGCGTGATGATTCATCAACCGTTGATTA
GTGGTGGCTTGGGTGGTCAAGCGTCTGATATTGAAATTCATGCACGTGAATTGTTGAAATTAAAAGAAAAGCTGAATCAA
ATGTTAGCAGAACACACAGGCAAAACCCTTGCCGAAGTGGAACGCGACACCGACCGCGATAATTTCATGTCGGCGCAAGA
AGCGATGGAATATGGTTTAATTGATAAGGTAATTACGTCTCGCAACGAAGTCGCATAA

Domains

Predicted by InterProScan.

• Clp protease (CLP_protease) (19-200)

3D structure

• AlphaFold DB: F5S7Y1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	68.063	93.171	0.634
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	67.368	92.683	0.624
clpP	Streptococcus thermophilus LMD-9	56.25	93.659	0.527
clpP	Streptococcus thermophilus LMG 18311	56.25	93.659	0.527
clpP	Streptococcus pneumoniae D39	55.67	94.634	0.527
clpP	Streptococcus pneumoniae Rx1	55.67	94.634	0.527
clpP	Streptococcus pneumoniae R6	55.67	94.634	0.527
clpP	Streptococcus pneumoniae TIGR4	55.67	94.634	0.527
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	55.789	92.683	0.517
clpP	Streptococcus pyogenes JRS4	55.789	92.683	0.517
clpP	Lactococcus lactis subsp. cremoris KW2	55.789	92.683	0.517
clpP	Streptococcus pyogenes MGAS315	55.789	92.683	0.517
clpP	Streptococcus mutans UA159	54.974	93.171	0.512