Detailed information NTG0376813

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: HAV35_RS04035
• Genome accession: NZ_CP050120
• Coordinates: 777454..778068 (-)
• Length: 204 a.a.
• NCBI ID: WP_010888605.1
• Uniprot ID: Q9RSZ7
• Organism: Deinococcus radiodurans strain BND-54
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 772454..783068

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HAV35_RS04020 (HAV35_04020)	-	772723..773607 (+)	885	WP_010888608.1	GNAT family N-acetyltransferase	-
HAV35_RS04025 (HAV35_04025)	lon	773659..776100 (-)	2442	WP_027479826.1	endopeptidase La	-
HAV35_RS04030 (HAV35_04030)	clpX	776247..777457 (-)	1211	Protein_789	ATP-dependent Clp protease ATP-binding subunit ClpX	-
HAV35_RS04035 (HAV35_04035)	clpP	777454..778068 (-)	615	WP_010888605.1	ATP-dependent Clp protease proteolytic subunit	Regulator
HAV35_RS04040 (HAV35_04040)	-	778142..778279 (-)	138	WP_166466060.1	hypothetical protein	-
HAV35_RS04045 (HAV35_04045)	-	778279..779325 (-)	1047	WP_166466061.1	MFS transporter	-
HAV35_RS04050 (HAV35_04050)	-	779521..780006 (+)	486	WP_010888603.1	GreA/GreB family elongation factor	-
HAV35_RS04055 (HAV35_04055)	-	780077..780427 (-)	351	WP_027479824.1	helix-turn-helix domain-containing protein	-
HAV35_RS04060 (HAV35_04060)	-	780517..781155 (+)	639	WP_027479823.1	nitroreductase family protein	-
HAV35_RS04065 (HAV35_04065)	-	781364..782158 (-)	795	WP_010888600.1	enoyl-ACP reductase	-
HAV35_RS04070 (HAV35_04070)	pgeF	782252..783013 (+)	762	WP_010888599.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 204 a.a.
• Molecular weight: 23025.54 Da
• Isoelectric Point: 4.8137

>NTDB_id=376813 HAV35_RS04035 WP_010888605.1 777454..778068(-) (clpP) [Deinococcus radiodurans strain BND-54]
MEVMSVIPYVIEQTGRGERSYDIYSRLLKDRIIFVGTPVESQMANSIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLAI
YDTMRYIKAPVSTICVGMAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLKLRDTLVDIYHKH
TDLPQEKLLRDMERDYFMSPEEALKYGLIDQVIDQTRENRGGEE

Nucleotide

• Length: 615 bp

>NTDB_id=376813 HAV35_RS04035 WP_010888605.1 777454..778068(-) (clpP) [Deinococcus radiodurans strain BND-54]
ATGGAGGTTATGAGTGTGATTCCCTACGTAATCGAGCAGACCGGACGCGGCGAGCGGTCCTACGACATCTACTCGCGGCT
GCTCAAAGACCGGATTATTTTCGTGGGGACGCCCGTCGAGTCGCAGATGGCGAACTCCATCGTGGCGCAACTGCTGCTGC
TCGATTCGCAAAACCCCGAGCAGGAAATTCAGATGTACATCAACTGCCCCGGCGGCGAAGTCTACGCGGGCCTGGCGATC
TACGACACCATGCGCTACATCAAGGCGCCCGTTTCGACCATCTGCGTCGGCATGGCGATGAGCATGGGCAGTGTCCTCCT
GATGGCCGGCGACAAGGGCAAGCGCATGGCCCTGCCCAACAGCCGCATCATGATTCACCAGGGCTCGGCGGGCTTCCGGG
GCAACACCCCCGACCTCGAAGTGCAGGCCAAAGAAGTCCTCAAGCTGCGCGACACGCTGGTGGACATCTACCACAAGCAC
ACCGACCTGCCGCAGGAAAAGCTGCTGCGTGACATGGAGCGCGACTACTTCATGTCGCCCGAAGAAGCCCTCAAGTACGG
GTTGATCGACCAAGTGATCGACCAGACCCGCGAAAACCGGGGAGGCGAAGAATGA

Domains

Predicted by InterProScan.

• Clp protease (CLP_protease) (16-195)

3D structure

• AlphaFold DB: Q9RSZ7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	56.853	96.569	0.549
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.842	93.137	0.529
clpP	Streptococcus pneumoniae Rx1	53.061	96.078	0.51
clpP	Streptococcus pneumoniae D39	53.061	96.078	0.51
clpP	Streptococcus pneumoniae R6	53.061	96.078	0.51
clpP	Streptococcus pneumoniae TIGR4	53.061	96.078	0.51
clpP	Streptococcus pyogenes JRS4	52.85	94.608	0.5
clpP	Streptococcus pyogenes MGAS315	52.85	94.608	0.5
clpP	Streptococcus thermophilus LMG 18311	52.062	95.098	0.495
clpP	Streptococcus thermophilus LMD-9	52.062	95.098	0.495
clpP	Streptococcus mutans UA159	51.269	96.569	0.495
clpP	Lactococcus lactis subsp. cremoris KW2	49.741	94.608	0.471
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	49.223	94.608	0.466