Detailed information
Bioinformatically predicted
Overview
| Name | clpP | Type | Regulator |
| Locus tag | HMPREF0837_RS04955 | Genome accession | NC_014251 |
| Coordinates | 947538..948128 (+) | Length | 196 a.a. |
| NCBI ID | WP_000613477.1 | Uniprot ID | A0A064BX72 |
| Organism | Streptococcus pneumoniae TCH8431/19A | ||
| Function | degradation of ComX; degradation of ComW (predicted from homology) Competence regulation |
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Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 946179..957190 | 947538..948128 | within | 0 |
Gene organization within MGE regions
Location: 946179..957190
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HMPREF0837_RS04945 (HMPREF0837_11028) | - | 946179..946646 (+) | 468 | WP_000136976.1 | cytidine/deoxycytidylate deaminase family protein | - |
| HMPREF0837_RS04950 (HMPREF0837_11029) | upp | 946735..947364 (+) | 630 | WP_000515974.1 | uracil phosphoribosyltransferase | - |
| HMPREF0837_RS04955 (HMPREF0837_11030) | clpP | 947538..948128 (+) | 591 | WP_000613477.1 | ATP-dependent Clp protease proteolytic subunit ClpP | Regulator |
| HMPREF0837_RS04960 (HMPREF0837_11031) | - | 948207..948455 (+) | 249 | WP_000462126.1 | YlbG family protein | - |
| HMPREF0837_RS04965 (HMPREF0837_11032) | - | 948557..949717 (+) | 1161 | WP_000726146.1 | ABC transporter substrate-binding protein | - |
| HMPREF0837_RS04970 (HMPREF0837_11033) | - | 949985..950854 (+) | 870 | WP_000941426.1 | branched-chain amino acid ABC transporter permease | - |
| HMPREF0837_RS04975 (HMPREF0837_11034) | - | 950858..951814 (+) | 957 | WP_000662293.1 | branched-chain amino acid ABC transporter permease | - |
| HMPREF0837_RS04980 (HMPREF0837_11035) | - | 951814..952578 (+) | 765 | WP_001186003.1 | ABC transporter ATP-binding protein | - |
| HMPREF0837_RS04985 (HMPREF0837_11036) | - | 952578..953288 (+) | 711 | WP_000062221.1 | ABC transporter ATP-binding protein | - |
| HMPREF0837_RS04990 (HMPREF0837_11037) | - | 953702..954358 (+) | 657 | WP_000268675.1 | CBS domain-containing protein | - |
| HMPREF0837_RS04995 (HMPREF0837_11038) | prfB | 954466..955561 (+) | 1096 | WP_010963246.1 | peptide chain release factor 2 | - |
| HMPREF0837_RS05000 (HMPREF0837_11039) | ftsE | 955579..956271 (+) | 693 | WP_000022268.1 | cell division ATP-binding protein FtsE | - |
| HMPREF0837_RS05005 (HMPREF0837_11040) | ftsX | 956264..957190 (+) | 927 | WP_000625538.1 | permease-like cell division protein FtsX | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 21358.36 Da Isoelectric Point: 4.4910
>NTDB_id=37604 HMPREF0837_RS04955 WP_000613477.1 947538..948128(+) (clpP) [Streptococcus pneumoniae TCH8431/19A]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKILAENSGQ
SMEKVHADAERDNWMSAQETLEYGFIDEIMANNSLN
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKILAENSGQ
SMEKVHADAERDNWMSAQETLEYGFIDEIMANNSLN
Nucleotide
Download Length: 591 bp
>NTDB_id=37604 HMPREF0837_RS04955 WP_000613477.1 947538..948128(+) (clpP) [Streptococcus pneumoniae TCH8431/19A]
ATGATTCCTGTAGTTATTGAACAAACAAGCCGTGGAGAACGTTCTTACGATATTTACTCACGTCTTCTCAAAGACCGCAT
CATTATGCTGACAGGTCCGGTTGAAGACAATATGGCTAACTCTGTTATTGCCCAATTGCTTTTCTTGGATGCCCAAGATA
GTACAAAAGATATTTACCTTTATGTCAATACACCAGGTGGTTCTGTTTCAGCTGGTTTGGCAATCGTAGATACCATGAAC
TTTATCAAGGCAGATGTCCAAACCATTGTTATGGGAATGGCTGCATCTATGGGGACTGTCATCGCATCAAGTGGGGCAAA
AGGCAAACGTTTCATGCTTCCAAATGCTGAATACATGATTCACCAACCAATGGGCGGTACAGGTGGTGGTACCCAACAAA
CTGATATGGCTATCGCTGCAGAACACTTGCTCAAAACTCGTAATACCTTGGAAAAAATCTTGGCTGAAAATTCAGGTCAG
TCAATGGAAAAAGTCCATGCAGATGCAGAACGTGATAACTGGATGAGCGCCCAGGAAACACTTGAATATGGCTTTATTGA
TGAAATTATGGCCAACAATTCATTGAACTAA
ATGATTCCTGTAGTTATTGAACAAACAAGCCGTGGAGAACGTTCTTACGATATTTACTCACGTCTTCTCAAAGACCGCAT
CATTATGCTGACAGGTCCGGTTGAAGACAATATGGCTAACTCTGTTATTGCCCAATTGCTTTTCTTGGATGCCCAAGATA
GTACAAAAGATATTTACCTTTATGTCAATACACCAGGTGGTTCTGTTTCAGCTGGTTTGGCAATCGTAGATACCATGAAC
TTTATCAAGGCAGATGTCCAAACCATTGTTATGGGAATGGCTGCATCTATGGGGACTGTCATCGCATCAAGTGGGGCAAA
AGGCAAACGTTTCATGCTTCCAAATGCTGAATACATGATTCACCAACCAATGGGCGGTACAGGTGGTGGTACCCAACAAA
CTGATATGGCTATCGCTGCAGAACACTTGCTCAAAACTCGTAATACCTTGGAAAAAATCTTGGCTGAAAATTCAGGTCAG
TCAATGGAAAAAGTCCATGCAGATGCAGAACGTGATAACTGGATGAGCGCCCAGGAAACACTTGAATATGGCTTTATTGA
TGAAATTATGGCCAACAATTCATTGAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpP | Streptococcus pneumoniae Rx1 |
100 |
100 |
1 |
| clpP | Streptococcus pneumoniae D39 |
100 |
100 |
1 |
| clpP | Streptococcus pneumoniae R6 |
100 |
100 |
1 |
| clpP | Streptococcus pneumoniae TIGR4 |
100 |
100 |
1 |
| clpP | Streptococcus thermophilus LMG 18311 |
92.821 |
99.49 |
0.923 |
| clpP | Streptococcus thermophilus LMD-9 |
92.821 |
99.49 |
0.923 |
| clpP | Streptococcus pyogenes JRS4 |
90.769 |
99.49 |
0.903 |
| clpP | Streptococcus pyogenes MGAS315 |
90.769 |
99.49 |
0.903 |
| clpP | Streptococcus mutans UA159 |
85.714 |
100 |
0.857 |
| clpP | Lactococcus lactis subsp. lactis strain DGCC12653 |
85.128 |
99.49 |
0.847 |
| clpP | Lactococcus lactis subsp. cremoris KW2 |
84.615 |
99.49 |
0.842 |
| clpP | Bacillus subtilis subsp. subtilis str. 168 |
58.854 |
97.959 |
0.577 |
| clpP | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
58.031 |
98.469 |
0.571 |