Detailed information    

insolico Bioinformatically predicted

Overview


Name   hns   Type   Regulator
Locus tag   FPL17_RS12735 Genome accession   NZ_CP041970
Coordinates   2777493..2777819 (-) Length   108 a.a.
NCBI ID   WP_005191849.1    Uniprot ID   N9MKM2
Organism   Acinetobacter dispersus strain NCCP 16014     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 2772493..2782819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL17_RS12715 (FPL17_12860) - 2772746..2773363 (-) 618 WP_005191858.1 FHA domain-containing protein -
  FPL17_RS12720 (FPL17_12865) gspD 2773427..2775691 (-) 2265 WP_078197323.1 type II secretion system secretin GspD -
  FPL17_RS12725 (FPL17_12870) - 2775733..2776572 (-) 840 WP_078197325.1 type II secretion system protein N -
  FPL17_RS12730 (FPL17_12875) gspN 2776572..2777315 (-) 744 WP_005191850.1 type II secretion system protein N -
  FPL17_RS12735 (FPL17_12880) hns 2777493..2777819 (-) 327 WP_005191849.1 H-NS family nucleoid-associated regulatory protein Regulator
  FPL17_RS12740 (FPL17_12885) - 2778210..2778647 (-) 438 WP_078197329.1 acyl-CoA thioesterase -
  FPL17_RS12745 (FPL17_12890) - 2778656..2779849 (-) 1194 WP_159885380.1 heme biosynthesis protein HemY -
  FPL17_RS12750 (FPL17_12895) - 2779856..2780683 (-) 828 WP_159885382.1 hypothetical protein -
  FPL17_RS12755 (FPL17_12900) - 2780680..2781456 (-) 777 WP_159885384.1 uroporphyrinogen-III synthase -
  FPL17_RS12760 (FPL17_12905) hemC 2781456..2782373 (-) 918 WP_159885386.1 hydroxymethylbilane synthase -

Sequence


Protein


Download         Length: 108 a.a.        Molecular weight: 12242.92 Da        Isoelectric Point: 5.0269

>NTDB_id=375082 FPL17_RS12735 WP_005191849.1 2777493..2777819(-) (hns) [Acinetobacter dispersus strain NCCP 16014]
MKPDISDLSVEDLKRLQAEAEALIASKKDQAIEDAYNQIIAIADAIGFSVEELLEVGEQKRKKTTRKAVEPRYRNKSNAE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=375082 FPL17_RS12735 WP_005191849.1 2777493..2777819(-) (hns) [Acinetobacter dispersus strain NCCP 16014]
ATGAAACCAGATATTAGCGATTTATCTGTAGAAGATTTAAAGCGTTTACAAGCAGAAGCGGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCATATAATCAAATTATTGCAATTGCAGATGCGATTGGTTTTAGCGTTGAAGAATTAT
TGGAAGTTGGCGAGCAAAAGCGTAAGAAAACAACGCGTAAAGCAGTAGAGCCACGCTACCGTAATAAAAGCAATGCTGAA
GAAACTTGGACTGGTCGTGGTAAACAACCACGTTGGTTAGTTGCTGAATTAGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains


Predicted by InterproScan.

(13-102)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB N9MKM2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

87.963

100

0.88


Multiple sequence alignment