Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FN924_RS18665 Genome accession   NZ_CP041666
Coordinates   3598788..3599252 (-) Length   154 a.a.
NCBI ID   WP_143897042.1    Uniprot ID   A0A516KKU2
Organism   Radiobacillus deserti strain TKL69     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3593788..3604252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FN924_RS18645 (FN924_18645) - 3594432..3595223 (+) 792 WP_143897039.1 HAD family hydrolase -
  FN924_RS18650 (FN924_18650) serA 3595264..3596850 (-) 1587 WP_143897040.1 phosphoglycerate dehydrogenase -
  FN924_RS18655 (FN924_18655) - 3596855..3598010 (-) 1156 Protein_3716 pyridoxal-phosphate-dependent aminotransferase family protein -
  FN924_RS18660 (FN924_18660) rpsR 3598533..3598766 (-) 234 WP_143897041.1 30S ribosomal protein S18 -
  FN924_RS18665 (FN924_18665) ssbA 3598788..3599252 (-) 465 WP_143897042.1 single-stranded DNA-binding protein Machinery gene
  FN924_RS18670 (FN924_18670) rpsF 3599265..3599555 (-) 291 WP_143897043.1 30S ribosomal protein S6 -
  FN924_RS18675 (FN924_18675) ychF 3599723..3600823 (-) 1101 WP_143897044.1 redox-regulated ATPase YchF -
  FN924_RS18680 (FN924_18680) - 3601001..3601201 (-) 201 WP_143897045.1 DUF951 domain-containing protein -
  FN924_RS18685 (FN924_18685) - 3601206..3602120 (-) 915 WP_228409517.1 mechanosensitive ion channel family protein -
  FN924_RS18690 (FN924_18690) - 3602117..3603142 (-) 1026 WP_143897046.1 GerAB/ArcD/ProY family transporter -
  FN924_RS18695 (FN924_18695) yyaC 3603242..3603841 (+) 600 WP_407692026.1 spore protease YyaC -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16897.57 Da        Isoelectric Point: 4.4805

>NTDB_id=372923 FN924_RS18665 WP_143897042.1 3598788..3599252(-) (ssbA) [Radiobacillus deserti strain TKL69]
MLNRVVLVGRLTKDPDLRYTPNGVAVANFTLAVNRPFSNQQGNREADFINCVVWRRPAENLANFMSKGSLVGVDGRIQTR
SFDGQDGKRVFITEVVADSVQFLETKGASSGGGQGSAGFQPNQNQSNNNDFAREDDPFRDNGEPIDISDDDLPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=372923 FN924_RS18665 WP_143897042.1 3598788..3599252(-) (ssbA) [Radiobacillus deserti strain TKL69]
ATGTTGAATCGTGTCGTACTCGTCGGCAGGTTGACGAAGGATCCGGACTTACGCTATACACCAAATGGAGTAGCTGTAGC
CAATTTCACCTTAGCAGTAAATCGTCCTTTTTCTAACCAACAAGGAAACAGAGAAGCGGATTTTATTAACTGTGTTGTTT
GGAGAAGACCAGCAGAAAACTTAGCAAACTTTATGAGTAAAGGGAGCTTAGTTGGAGTAGATGGTCGTATCCAAACAAGA
AGTTTTGACGGACAAGACGGAAAACGTGTCTTTATTACGGAAGTTGTAGCGGATTCTGTGCAATTCCTAGAAACAAAAGG
TGCCTCTTCCGGAGGAGGACAAGGTTCGGCTGGATTCCAACCAAATCAGAACCAATCAAACAACAATGACTTTGCAAGAG
AGGACGACCCATTCCGTGATAATGGGGAGCCAATTGATATATCTGATGACGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A516KKU2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.92

100

0.688
  ssb Latilactobacillus sakei subsp. sakei 23K

54.706

100

0.604
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

68.831

0.422
  ssb Glaesserella parasuis strain SC1401

33.898

100

0.39
  ssbB Streptococcus sobrinus strain NIDR 6715-7

40

90.909

0.364
  ssb Neisseria meningitidis MC58

32

100

0.364
  ssb Neisseria gonorrhoeae MS11

32

100

0.364

Multiple sequence alignment