Detailed information    

insolico Bioinformatically predicted

Overview


Name   prx   Type   Regulator
Locus tag   FNL90_RS03145 Genome accession   NZ_CP041408
Coordinates   587615..587797 (+) Length   60 a.a.
NCBI ID   WP_011528776.1    Uniprot ID   A0A660A5W9
Organism   Streptococcus pyogenes strain 37-97S     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 537071..587797 587615..587797 within 0


Gene organization within MGE regions


Location: 537071..587797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNL90_RS02815 (FNL90_02920) ftsE 538070..538762 (+) 693 WP_002985455.1 cell division ATP-binding protein FtsE -
  FNL90_RS02820 (FNL90_02925) ftsX 538755..539684 (+) 930 WP_002990498.1 permease-like cell division protein FtsX -
  FNL90_RS02825 (FNL90_02930) - 539993..540628 (-) 636 WP_002985449.1 MBL fold metallo-hydrolase -
  FNL90_RS02830 (FNL90_02935) - 540859..541623 (+) 765 WP_002990495.1 (S)-acetoin forming diacetyl reductase -
  FNL90_RS02835 (FNL90_02940) - 541773..544232 (+) 2460 WP_047235219.1 bifunctional DnaQ family exonuclease/ATP-dependent helicase -
  FNL90_RS02840 (FNL90_02945) - 544567..545760 (+) 1194 WP_002985439.1 pyridoxal phosphate-dependent aminotransferase -
  FNL90_RS02845 (FNL90_02950) asnS 545782..547128 (+) 1347 WP_002985437.1 asparagine--tRNA ligase -
  FNL90_RS02850 (FNL90_02955) rapZ 547543..548433 (+) 891 WP_002985434.1 RNase adapter RapZ -
  FNL90_RS02855 (FNL90_02960) - 548430..549407 (+) 978 WP_011284642.1 YvcK family protein -
  FNL90_RS02860 (FNL90_02965) whiA 549404..550315 (+) 912 WP_047235220.1 DNA-binding protein WhiA -
  FNL90_RS02865 (FNL90_02970) - 550492..551907 (-) 1416 WP_011017563.1 recombinase family protein -
  FNL90_RS02870 (FNL90_02975) - 552030..552335 (-) 306 WP_002985420.1 membrane protein -
  FNL90_RS02875 (FNL90_02980) - 552345..553109 (-) 765 WP_002985417.1 helix-turn-helix transcriptional regulator -
  FNL90_RS02880 (FNL90_02985) - 553469..553627 (+) 159 WP_002985414.1 hypothetical protein -
  FNL90_RS02885 (FNL90_02990) - 553726..554367 (-) 642 WP_001008979.1 hypothetical protein -
  FNL90_RS02890 (FNL90_02995) - 554419..554607 (+) 189 WP_002985407.1 helix-turn-helix transcriptional regulator -
  FNL90_RS02895 (FNL90_03000) - 554656..555417 (+) 762 WP_002985404.1 phage repressor protein/antirepressor Ant -
  FNL90_RS09730 - 555430..555561 (+) 132 WP_002985401.1 hypothetical protein -
  FNL90_RS02900 (FNL90_03005) - 555558..555740 (-) 183 WP_011889039.1 hypothetical protein -
  FNL90_RS02905 (FNL90_03010) - 555827..555964 (+) 138 WP_002985395.1 BOW99_gp33 family protein -
  FNL90_RS02910 (FNL90_03015) - 555966..556151 (+) 186 WP_002985392.1 hypothetical protein -
  FNL90_RS09735 (FNL90_03020) - 556251..556490 (+) 240 WP_002985390.1 hypothetical protein -
  FNL90_RS02915 (FNL90_03025) - 556649..557035 (+) 387 WP_002985388.1 DnaD domain-containing protein -
  FNL90_RS02920 (FNL90_03030) - 557016..557249 (+) 234 WP_002985387.1 hypothetical protein -
  FNL90_RS02925 (FNL90_03035) - 557246..557386 (+) 141 WP_011017992.1 hypothetical protein -
  FNL90_RS02930 (FNL90_03040) - 557395..557601 (+) 207 WP_011017565.1 hypothetical protein -
  FNL90_RS02935 (FNL90_03045) - 557657..557989 (+) 333 WP_010922475.1 hypothetical protein -
  FNL90_RS02940 (FNL90_03050) - 557989..558978 (+) 990 WP_010922474.1 recombinase RecT -
  FNL90_RS02945 (FNL90_03055) - 558975..559175 (+) 201 WP_000594115.1 hypothetical protein -
  FNL90_RS02950 (FNL90_03060) - 559168..559965 (+) 798 WP_011054699.1 PD-(D/E)XK nuclease-like domain-containing protein -
  FNL90_RS02955 (FNL90_03065) - 560330..560725 (+) 396 WP_011054698.1 Cas9 inhibitor AcrIIA9 family protein -
  FNL90_RS02960 (FNL90_03070) - 560722..562068 (+) 1347 WP_011054697.1 PcfJ domain-containing protein -
  FNL90_RS02965 (FNL90_03075) - 562095..562412 (+) 318 WP_185168156.1 hypothetical protein -
  FNL90_RS02970 (FNL90_03080) - 562409..562921 (+) 513 WP_011054695.1 hypothetical protein -
  FNL90_RS02975 (FNL90_03085) - 562957..563274 (+) 318 WP_011054694.1 DUF1372 family protein -
  FNL90_RS02980 - 563271..563426 (+) 156 WP_011054693.1 hypothetical protein -
  FNL90_RS02985 (FNL90_03090) - 563423..563674 (+) 252 WP_011054692.1 hypothetical protein -
  FNL90_RS02990 (FNL90_03095) - 563750..564169 (+) 420 WP_011528791.1 DUF1492 domain-containing protein -
  FNL90_RS02995 (FNL90_03100) - 564277..564621 (+) 345 WP_011054690.1 HNH endonuclease signature motif containing protein -
  FNL90_RS03000 (FNL90_03105) - 564769..565125 (+) 357 WP_002994106.1 hypothetical protein -
  FNL90_RS03005 (FNL90_03110) - 565122..566390 (+) 1269 WP_010922468.1 phage portal protein -
  FNL90_RS03010 (FNL90_03115) - 566383..567876 (+) 1494 WP_010922467.1 hypothetical protein -
  FNL90_RS03015 (FNL90_03120) - 567882..568106 (+) 225 WP_002994100.1 hypothetical protein -
  FNL90_RS03020 (FNL90_03125) - 568158..568424 (+) 267 WP_011054745.1 hypothetical protein -
  FNL90_RS03025 (FNL90_03130) - 568426..568662 (+) 237 Protein_552 hypothetical protein -
  FNL90_RS03030 (FNL90_03135) - 568744..570159 (+) 1416 WP_021299324.1 phage terminase large subunit-like protein -
  FNL90_RS03035 (FNL90_03140) - 570239..570700 (+) 462 WP_010922462.1 DUF4355 domain-containing protein -
  FNL90_RS03040 (FNL90_03145) - 570725..571636 (+) 912 WP_011528788.1 phage major capsid protein -
  FNL90_RS03045 (FNL90_03150) - 571636..571836 (+) 201 WP_010922460.1 hypothetical protein -
  FNL90_RS03050 (FNL90_03155) - 571846..572268 (+) 423 WP_011054682.1 phage Gp19/Gp15/Gp42 family protein -
  FNL90_RS03055 (FNL90_03160) - 572228..572566 (+) 339 WP_011054681.1 hypothetical protein -
  FNL90_RS03060 (FNL90_03165) - 572559..572795 (+) 237 WP_000032787.1 hypothetical protein -
  FNL90_RS03065 (FNL90_03170) - 572796..573131 (+) 336 WP_011528787.1 hypothetical protein -
  FNL90_RS03070 (FNL90_03175) - 573143..573721 (+) 579 WP_014635577.1 hypothetical protein -
  FNL90_RS03075 (FNL90_03180) - 573732..573995 (+) 264 WP_003047548.1 hypothetical protein -
  FNL90_RS03080 (FNL90_03185) - 574010..574381 (+) 372 WP_011528785.1 DUF5361 domain-containing protein -
  FNL90_RS03085 (FNL90_03190) - 574381..576738 (+) 2358 WP_011528784.1 hypothetical protein -
  FNL90_RS03090 (FNL90_03195) - 576735..577430 (+) 696 WP_047235222.1 hypothetical protein -
  FNL90_RS03095 (FNL90_03200) - 577412..579388 (+) 1977 WP_047235223.1 phage tail spike protein -
  FNL90_RS03100 (FNL90_03205) hylP 579385..580500 (+) 1116 WP_011528782.1 hyaluronoglucosaminidase -
  FNL90_RS03105 (FNL90_03210) - 580515..582296 (+) 1782 WP_011528781.1 gp58-like family protein -
  FNL90_RS03110 (FNL90_03215) - 582305..582733 (+) 429 WP_011528780.1 DUF1617 family protein -
  FNL90_RS03115 (FNL90_03220) - 582736..583368 (+) 633 WP_011528779.1 hypothetical protein -
  FNL90_RS03120 (FNL90_03225) - 583380..583652 (+) 273 WP_011017397.1 hypothetical protein -
  FNL90_RS03125 (FNL90_03230) - 583649..583876 (+) 228 WP_003058873.1 phage holin -
  FNL90_RS03130 (FNL90_03235) - 583995..585212 (+) 1218 WP_011528778.1 peptidoglycan amidohydrolase family protein -
  FNL90_RS03135 (FNL90_03240) - 585348..586472 (+) 1125 WP_002988467.1 Fic family protein -
  FNL90_RS03140 (FNL90_03245) entC3 586720..587502 (+) 783 WP_002988472.1 enterotoxin type C3 EntC3 -
  FNL90_RS03145 (FNL90_03250) prx 587615..587797 (+) 183 WP_011528776.1 hypothetical protein Regulator

Sequence


Protein


Download         Length: 60 a.a.        Molecular weight: 6840.81 Da        Isoelectric Point: 4.7023

>NTDB_id=371883 FNL90_RS03145 WP_011528776.1 587615..587797(+) (prx) [Streptococcus pyogenes strain 37-97S]
MLTYNEFKQAIDNGYIAGDTVAIVRKDGQIFDYVLPHEKVKNGEVVTKEKVEEVLVELSR

Nucleotide


Download         Length: 183 bp        

>NTDB_id=371883 FNL90_RS03145 WP_011528776.1 587615..587797(+) (prx) [Streptococcus pyogenes strain 37-97S]
ATGCTAACATACAACGAGTTTAAGCAAGCGATTGACAATGGATATATCGCAGGCGATACAGTAGCGATCGTGCGTAAAGA
CGGACAGATTTTTGATTATGTGTTGCCACATGAGAAAGTAAAGAATGGAGAAGTTGTGACTAAGGAAAAAGTGGAAGAGG
TGCTGGTGGAGCTTTCGAGATAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A660A5W9

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS8232

98.333

100

0.983

  prx Streptococcus pyogenes MGAS315

83.333

100

0.833

  prx Streptococcus pyogenes MGAS315

78.333

100

0.783

  prx Streptococcus pyogenes MGAS315

71.667

100

0.717

  prx Streptococcus pyogenes MGAS315

87.805

68.333

0.6

  prx Streptococcus pyogenes MGAS315

81.395

71.667

0.583

  prx Streptococcus pyogenes MGAS315

76.19

70

0.533


Multiple sequence alignment