Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   G5S46_RS07210 Genome accession   NZ_CP048929
Coordinates   1391058..1393247 (-) Length   729 a.a.
NCBI ID   WP_003695604.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain CT213     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1386058..1398247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5S46_RS07185 (G5S46_07100) - 1387108..1387245 (+) 138 WP_153707873.1 hypothetical protein -
  G5S46_RS07190 (G5S46_07105) - 1387324..1388094 (+) 771 Protein_1410 ABC transporter permease -
  G5S46_RS07195 (G5S46_07110) - 1388121..1388813 (+) 693 WP_003689290.1 ATP-binding cassette domain-containing protein -
  G5S46_RS07200 (G5S46_07115) - 1389005..1389619 (+) 615 WP_003703682.1 CadD family cadmium resistance transporter -
  G5S46_RS07205 - 1389915..1391011 (+) 1097 Protein_1413 NnrS family protein -
  G5S46_RS07210 (G5S46_07130) priA 1391058..1393247 (-) 2190 WP_003695604.1 primosomal protein N' Machinery gene
  G5S46_RS07215 (G5S46_07135) - 1393387..1394169 (+) 783 WP_003701617.1 DsbC family protein -
  G5S46_RS07220 (G5S46_07140) - 1394271..1396205 (-) 1935 WP_003695602.1 MacB family efflux pump subunit -
  G5S46_RS07225 (G5S46_07145) - 1396271..1397449 (-) 1179 WP_050171041.1 MacA family efflux pump subunit -
  G5S46_RS07230 (G5S46_07150) - 1397675..1398064 (+) 390 WP_003705766.1 type IV pilin protein -

Sequence

Protein


Download         Length: 729 a.a.        Molecular weight: 81089.94 Da        Isoelectric Point: 8.2413

>NTDB_id=371750 G5S46_RS07210 WP_003695604.1 1391058..1393247(-) (priA) [Neisseria gonorrhoeae strain CT213]
MIYHRIAVNVPLSDGLLTYSHSEPLPPGTRVLVPFRNKTVVGMVWETDIAPDMDAARILSVQTVFVEEKPLSQSWRDLLA
FTSRYYHYPTGQAVFAALPQGLKETRAVEMPQPPLFYALNEAGRAQTPPPARFNKKAALWDALLSGEMTMAALKQANAQA
AKLIEDWAEQGWIETTEAAKPVLRPYRGQASHSEFVLNTGQQKASDEIQTALGRFRSFLLYGITGSGKTEVYFDAMAKVL
AQGRQVLFLLPEINLTPQLLKRVENRFADVPTAVLHSRMAAGRRTQDYLRAMLGQAKLVIGTRLAVFTPLPDVGLIVVDE
EHDGSFKQDNELRYHARDLAVWRAKQGGCPVVLGSATPSLESWHKAQSGAYRLLQLTERAHASAQLPQVDILNIGRLKLD
NGFSPQALQLLKQNFEAGGMSLVYLNRRGFAPALFCGDCGHTFGCPNCSAKMVLHQRARQLRCHHCDHREPIPFKCPDCG
NQDLTAVGHGTQRVEETLRALLPKAAVVRVDRDSTAHKNDWADLYRRIANDEIDILVGTQMLAKGHDFARLNLVIVLNAD
GSLYSADFRAPERLFAELMQVSGRAGRADKPGKVLIQTQLPEHPVFAAVKAQDYAVFAENELNERQMFAMPPFGFQTAVR
ADAPRVADAMEFLNAAKETLAPLLPESVSRFGAAPMLMVRLAERERAQVFLESTSRQDLHRAVSLWVQVLQQNRDGKIRW
SVDVDPQEA

Nucleotide


Download         Length: 2190 bp        

>NTDB_id=371750 G5S46_RS07210 WP_003695604.1 1391058..1393247(-) (priA) [Neisseria gonorrhoeae strain CT213]
ATGATCTACCATCGCATCGCTGTAAACGTGCCGCTTTCAGACGGCCTTTTGACTTATTCGCATTCCGAGCCGCTTCCTCC
GGGAACGCGGGTGCTTGTGCCTTTTCGCAATAAAACTGTTGTCGGGATGGTGTGGGAAACGGATATTGCGCCCGATATGG
ATGCGGCGCGGATTTTGAGCGTTCAGACGGTCTTTGTGGAAGAAAAGCCGCTGTCTCAAAGCTGGCGTGATTTGTTGGCG
TTTACGTCGCGTTATTACCACTATCCGACTGGGCAGGCTGTATTTGCCGCATTGCCGCAGGGTTTGAAGGAAACGCGCGC
GGTGGAAATGCCGCAGCCGCCGTTGTTTTATGCTTTGAACGAAGCGGGCAGGGCGCAAACGCCGCCGCCGGCTCGGTTCA
ACAAAAAAGCGGCTTTGTGGGACGCGCTGCTGTCGGGCGAAATGACGATGGCGGCGTTGAAACAGGCAAACGCGCAGGCG
GCGAAATTGATTGAGGATTGGGCGGAGCAGGGCTGGATTGAAACGACGGAAGCGGCGAAACCTGTTTTAAGGCCGTACCG
CGGGCAGGCTTCGCACTCTGAATTTGTATTAAATACCGGCCAGCAGAAGGCTTCCGATGAAATTCAGACGGCATTGGGAC
GCTTCCGGTCGTTTCTGCTGTACGGCATTACCGGCAGCGGCAAGACCGAGGTGTATTTCGATGCGATGGCGAAAGTGTTG
GCGCAGGGGCGACAGGTGTTGTTTCTGTTGCCCGAAATCAACCTCACGCCGCAGCTTTTAAAGCGGGTGGAAAACCGTTT
TGCCGACGTGCCGACCGCCGTGTTGCACAGCCGGATGGCGGCAGGCAGGCGCACGCAGGATTATCTGCGCGCGATGTTGG
GGCAGGCGAAGCTGGTGATCGGCACGCGGCTGGCGGTGTTTACGCCTTTGCCTGATGTCGGGCTGATTGTGGTCGATGAG
GAACACGACGGCTCGTTCAAACAAGACAACGAATTGCGCTACCACGCCCGCGATTTGGCGGTGTGGCGGGCGAAGCAGGG
CGGCTGTCCCGTCGTGTTGGGCAGTGCCACGCCCAGCTTGGAGAGTTGGCACAAGGCGCAAAGCGGCGCGTACCGCCTGC
TGCAACTGACCGAACGCGCCCATGCTTCCGCGCAACTGCCACAAGTGGACATCCTCAACATAGGTCGTCTGAAACTCGAT
AACGGCTTCTCACCGCAAGCCTTGCAGCTTTTGAAACAGAACTTTGAAGCGGGCGGTATGTCGCTGGTGTACCTTAACCG
GCGCGGCTTCGCGCCTGCGCTGTTTTGCGGCGACTGCGGCCATACCTTCGGCTGCCCGAACTGCTCCGCCAAAATGGTGC
TGCACCAACGCGCCCGCCAACTGCGCTGCCACCACTGCGACCACCGCGAACCCATCCCGTTCAAATGTCCCGACTGCGGC
AACCAAGACCTGACCGCCGTCGGACACGGTACGCAGCGCGTCGAAGAAACCCTGCGCGCCTTGCTGCCCAAGGCAGCCGT
CGTCCGCGTCGATAGGGACAGTACGGCGCACAAAAACGACTGGGCAGATTTGTACCGCCGCATCGCCAACGACGAAATCG
ACATTCTGGTCGGCACGCAGATGCTTGCCAAAGGCCATGATTTCGCGCGGCTCAACCTCGTTATCGTGTTGAATGCCGAC
GGCAGCCTGTACAGCGCGGATTTCCGTGCGCCGGAAAGGCTGTTTGCCGAGCTGATGCAAGTGTCCGGCAGGGCGGGGCG
CGCCGACAAACCCGGCAAGGTGCTGATACAGACCCAACTGCCCGAACACCCTGTCTTCGCCGCCGTCAAAGCGCAGGACT
ACGCCGTGTTTGCCGAAAACGAATTGAACGAACGGCAAATGTTCGCCATGCCGCCTTTCGGTTTTCAGACGGCCGTCCGT
GCCGATGCGCCGCGTGTTGCCGATGCGATGGAATTTCTCAACGCCGCCAAAGAAACCCTCGCCCCGCTCTTGCCCGAAAG
CGTCTCCCGGTTCGGTGCCGCCCCGATGCTGATGGTGCGCCTTGCCGAACGCGAACGTGCGCAAGTTTTCCTCGAATCAA
CATCCCGACAAGATTTGCACCGCGCCGTGAGTTTGTGGGTGCAGGTGTTGCAGCAGAACCGCGACGGCAAAATCCGATGG
TCGGTGGATGTCGATCCGCAGGAGGCTTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(209-361)

3DNA-binding domain (3BD) (PriA_3primeBD)

(5-99)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(445-471)

Primosomal protein N C-terminal domain (PriA_C)

(632-726)

Helicase conserved C-terminal domain (Helicase_C)

(516-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

36.536

100

0.37

Multiple sequence alignment