Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   FLG15_RS16150 Genome accession   NZ_CP041380
Coordinates   3596406..3597860 (+) Length   484 a.a.
NCBI ID   WP_170922314.1    Uniprot ID   -
Organism   Xanthomonas phaseoli pv. dieffenbachiae strain D182     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3591406..3602860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLG15_RS16130 (FLG15_16140) - 3591693..3592055 (-) 363 Protein_3026 hypothetical protein -
  FLG15_RS16135 (FLG15_16145) sucD 3592229..3593104 (-) 876 WP_150146785.1 succinate--CoA ligase subunit alpha -
  FLG15_RS16140 (FLG15_16150) sucC 3593129..3594298 (-) 1170 WP_007965356.1 ADP-forming succinate--CoA ligase subunit beta -
  FLG15_RS16145 (FLG15_16155) - 3594530..3596143 (+) 1614 WP_007965357.1 PAS domain-containing sensor histidine kinase -
  FLG15_RS16150 (FLG15_16160) pilR 3596406..3597860 (+) 1455 WP_170922314.1 sigma-54 dependent transcriptional regulator Regulator
  FLG15_RS16160 (FLG15_16170) - 3598459..3598578 (-) 120 WP_057687107.1 hypothetical protein -
  FLG15_RS16165 (FLG15_16175) - 3598640..3598759 (-) 120 WP_057687106.1 hypothetical protein -
  FLG15_RS16170 (FLG15_16180) pilB 3598821..3600530 (-) 1710 WP_057677884.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FLG15_RS16175 (FLG15_16185) pilA 3600688..3601116 (-) 429 WP_057677883.1 pilin Machinery gene
  FLG15_RS16180 (FLG15_16190) pilC 3601457..3602719 (+) 1263 WP_057677885.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52479.25 Da        Isoelectric Point: 6.9090

>NTDB_id=371749 FLG15_RS16150 WP_170922314.1 3596406..3597860(+) (pilR) [Xanthomonas phaseoli pv. dieffenbachiae strain D182]
MGHHLLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATISKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAAPPGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=371749 FLG15_RS16150 WP_170922314.1 3596406..3597860(+) (pilR) [Xanthomonas phaseoli pv. dieffenbachiae strain D182]
TTGGGCCACCACCTGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCCTGCGCATCAGCACCG
CTGCCAACCTGGCCGAGGCGCGCGAGTTGCTGGCCAACAATCCCTACGATTTGTGCCTGACCGACATGCGTTTGCCTGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCGCCACCGCCGCCACCGGAACAGGCCAGCCGC
CTGCTCGGCGACTCCAGTGCCATGGAAAGCCTGCGCGCCACCATCAGCAAGGTCGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCGGGTGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGCACGTGCCGCCGGCCCGTTCG
TACCGGTCAACTGTGGCGCCATTCCCGCCGAACTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGAGGCACGCTGTTTCTGGACGAAGTGGCCGAATTGCCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGCCCGGTCGGCGCATCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTGATCGAGTTGCGTGTGCCGCCGCTACGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCTGCCATCAT
CGCACGCCTGGCGCACAGCCACGGCCGCCCCATTCCGCTGCTGACCCAATCTGCGCTCGACGCATTGAATCACTACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCTACC
GACCTGCGCCTGCCTGCGCACGGCGGCCACCGTCTGGCCGCCCCCCCAGGAGGCGCCGCGGCCGAACCGCGCGAAGCCGT
GGTCGACATCGACCCCGCCTCGGCCGCGCTGCCGTCCTACATCGAACAACTGGAACGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATTACGTTTCGGGCGCTGCGTTACAAGCTGAAGAAG
CTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(28-134)

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

95.661

0.603
  pilR Acinetobacter baumannii strain A118

49.138

95.868

0.471

Multiple sequence alignment