Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AbD4_RS08945 Genome accession   NZ_CP048849
Coordinates   1878494..1879129 (+) Length   211 a.a.
NCBI ID   WP_000264042.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain D4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1873494..1884129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AbD4_RS08920 (AbD4_01796) - 1874334..1875347 (+) 1014 WP_001096098.1 aminoglycoside phosphotransferase family protein -
  AbD4_RS08925 (AbD4_01797) murU 1875347..1876036 (+) 690 WP_000646455.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  AbD4_RS08930 (AbD4_01798) rsmG 1876124..1876756 (+) 633 WP_000553196.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  AbD4_RS08935 (AbD4_01799) - 1876778..1877560 (+) 783 WP_000057212.1 ParA family protein -
  AbD4_RS08940 (AbD4_01800) - 1877557..1878444 (+) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  AbD4_RS08945 (AbD4_01801) exbB 1878494..1879129 (+) 636 WP_000264042.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AbD4_RS08950 (AbD4_01802) - 1879145..1879573 (+) 429 WP_000669680.1 ExbD/TolR family protein -
  AbD4_RS08955 (AbD4_01803) msbA 1879570..1881297 (+) 1728 WP_001070738.1 lipid A export permease/ATP-binding protein MsbA -
  AbD4_RS08960 (AbD4_01804) lpxK 1881300..1882310 (+) 1011 WP_000050452.1 tetraacyldisaccharide 4'-kinase -
  AbD4_RS08965 (AbD4_01805) kdsB 1882320..1883081 (+) 762 WP_000680701.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AbD4_RS08970 (AbD4_01806) - 1883093..1884073 (+) 981 WP_001075418.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23224.13 Da        Isoelectric Point: 6.2379

>NTDB_id=370992 AbD4_RS08945 WP_000264042.1 1878494..1879129(+) (exbB) [Acinetobacter baumannii strain D4]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEYQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=370992 AbD4_RS08945 WP_000264042.1 1878494..1879129(+) (exbB) [Acinetobacter baumannii strain D4]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TTATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGTATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAGAAAAATATTAA
CTTCTTAGGAACCTTAAGTGCTATTGCGCCTTTACTAGGACTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCGCTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393

Multiple sequence alignment