Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   FK537_RS06530 Genome accession   NZ_CP041291
Coordinates   1272250..1273110 (+) Length   286 a.a.
NCBI ID   WP_075175010.1    Uniprot ID   -
Organism   Acinetobacter indicus strain 94-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1267250..1278110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FK537_RS06510 (FK537_06585) secG 1267864..1268193 (-) 330 WP_168369781.1 preprotein translocase subunit SecG -
  FK537_RS06515 (FK537_06590) tpiA 1268207..1268998 (-) 792 WP_005181780.1 triose-phosphate isomerase -
  FK537_RS06520 (FK537_06595) pilB 1269287..1270993 (+) 1707 WP_075167609.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FK537_RS06525 (FK537_06600) pilC 1271024..1272250 (+) 1227 WP_016659656.1 type II secretion system F family protein Machinery gene
  FK537_RS06530 (FK537_06605) pilD 1272250..1273110 (+) 861 WP_075175010.1 prepilin peptidase Machinery gene
  FK537_RS06535 (FK537_06610) coaE 1273121..1273729 (+) 609 WP_075167608.1 dephospho-CoA kinase -
  FK537_RS06540 (FK537_06615) - 1273726..1274646 (-) 921 WP_016659657.1 DMT family transporter -
  FK537_RS06545 (FK537_06620) rlmB 1274664..1275416 (-) 753 WP_005181769.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  FK537_RS06550 (FK537_06625) - 1275522..1275845 (-) 324 WP_168369782.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32066.36 Da        Isoelectric Point: 7.8299

>NTDB_id=370994 FK537_RS06530 WP_075175010.1 1272250..1273110(+) (pilD) [Acinetobacter indicus strain 94-2]
MQEFIHYLIQHPTALYFVVGIFSLCIGSFLNVVIYRTPKMMEQEWRNDCQMLLHPEQAIMDESKISLSQPASTCPKCHSP
IRWYQNIPVISWLLLRGKCGQCQNPISIRYPFIELLTAVCALTVVAVFGPTLQMLFGLVLTYVLIALTFIDFDTQLLPDR
YTLPLAALGLGVNSYALYTSASSAIWGYIIGFLCLWVVYYLFKLVTGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
VGAIIGIILLKIRKENQPFAFGPYIAIAGWIAFLWGDAIMKLYLGQ

Nucleotide


Download         Length: 861 bp        

>NTDB_id=370994 FK537_RS06530 WP_075175010.1 1272250..1273110(+) (pilD) [Acinetobacter indicus strain 94-2]
ATGCAAGAATTCATTCATTATCTGATTCAACACCCAACTGCGCTGTATTTCGTAGTTGGGATTTTTAGTTTATGTATTGG
CAGTTTTCTGAATGTGGTGATTTACCGCACGCCAAAAATGATGGAACAGGAATGGCGCAATGACTGTCAAATGCTGCTGC
ATCCTGAACAGGCCATCATGGATGAAAGCAAAATCAGCCTCAGTCAGCCAGCCTCGACCTGTCCGAAATGCCACAGCCCG
ATTCGCTGGTATCAGAATATTCCAGTAATCAGCTGGCTGCTTCTACGTGGCAAATGTGGCCAATGCCAAAACCCGATCAG
TATTCGTTATCCTTTTATTGAACTGCTGACCGCAGTGTGTGCCTTAACCGTAGTCGCGGTTTTTGGCCCGACCCTGCAAA
TGCTGTTTGGCCTGGTGTTGACCTATGTGTTAATTGCCCTGACCTTTATTGATTTTGACACCCAGCTGCTGCCTGACCGC
TATACCCTCCCCCTGGCTGCACTCGGCTTGGGGGTGAACAGCTATGCCCTGTACACCTCCGCTAGCTCTGCCATTTGGGG
ATATATCATTGGCTTTTTATGTCTGTGGGTGGTGTATTACCTGTTTAAGCTGGTGACTGGCAAAGAAGGTATGGGCTATG
GCGATTTTAAATTGCTGGCCGCCTTAGGTGCCTGGATGGGCCCGCTGATGCTGCCGCTGATTGTGTTGCTATCTTCTCTG
GTTGGTGCAATCATTGGCATTATTTTGCTGAAAATCCGCAAAGAGAACCAGCCTTTTGCCTTTGGCCCTTATATTGCCAT
TGCCGGCTGGATCGCCTTTTTGTGGGGTGATGCAATCATGAAGCTTTATTTAGGTCAATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

79.649

99.65

0.794
  pilD Acinetobacter baumannii D1279779

79.298

99.65

0.79
  pilD Vibrio cholerae strain A1552

55.431

93.357

0.517
  pilD Vibrio campbellii strain DS40M4

53.184

93.357

0.497
  pilD Neisseria gonorrhoeae MS11

47.71

91.608

0.437

Multiple sequence alignment