Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NIBR502773_RS19555 Genome accession   NZ_CP041189
Coordinates   4248307..4249515 (-) Length   402 a.a.
NCBI ID   WP_141156727.1    Uniprot ID   A0AAP9A835
Organism   Pseudomonas sp. NIBRBAC000502773     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4243307..4254515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIBR502773_RS19515 (NIBR502773_19515) - 4244224..4244397 (-) 174 WP_043293437.1 DUF3094 family protein -
  NIBR502773_RS19520 (NIBR502773_19520) - 4244452..4245081 (-) 630 WP_027604891.1 DUF1780 domain-containing protein -
  NIBR502773_RS19525 (NIBR502773_19525) - 4245186..4245653 (+) 468 WP_141156724.1 FAD/FMN-containing dehydrogenase -
  NIBR502773_RS19530 (NIBR502773_19530) - 4245650..4246339 (+) 690 WP_141156725.1 energy-coupling factor ABC transporter permease -
  NIBR502773_RS19535 (NIBR502773_19535) - 4246415..4246630 (+) 216 WP_003171680.1 hypothetical protein -
  NIBR502773_RS19540 (NIBR502773_19540) yacG 4246627..4246827 (-) 201 WP_027604888.1 DNA gyrase inhibitor YacG -
  NIBR502773_RS19545 (NIBR502773_19545) coaE 4246824..4247447 (-) 624 WP_115486604.1 dephospho-CoA kinase -
  NIBR502773_RS19550 (NIBR502773_19550) pilD 4247444..4248310 (-) 867 WP_141156726.1 A24 family peptidase Machinery gene
  NIBR502773_RS19555 (NIBR502773_19555) pilC 4248307..4249515 (-) 1209 WP_141156727.1 type II secretion system F family protein Machinery gene
  NIBR502773_RS19560 (NIBR502773_19560) - 4249718..4250128 (+) 411 WP_141157855.1 pilin -
  NIBR502773_RS19565 (NIBR502773_19565) - 4250164..4251564 (+) 1401 WP_141156728.1 O-antigen ligase -
  NIBR502773_RS19575 (NIBR502773_19575) - 4251836..4252141 (+) 306 WP_027604882.1 DUF6388 family protein -
  NIBR502773_RS31155 - 4252163..4252252 (+) 90 Protein_3827 outer membrane lipoprotein carrier protein LolA -
  NIBR502773_RS19580 (NIBR502773_19580) nadC 4252260..4253108 (-) 849 WP_027604881.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43078.34 Da        Isoelectric Point: 10.0472

>NTDB_id=370315 NIBR502773_RS19555 WP_141156727.1 4248307..4249515(-) (pilC) [Pseudomonas sp. NIBRBAC000502773]
MDNASTIYAWEGINRKGRRVSGQTKGHNAALVKAQLRQQGISPGRVRKQSPLLPSLTPSVKAADITLFTRQLAALLKAGV
PLLQAFDIISEGVDNRAVREQVLGLKQAIAAGSSLAEALRKQPRHFDELYCNLVAAGEQAGALETLLERVAIHREKSEQL
KARIKKAMTYPIAVLVVASLVTGILLVHVVPQFQALFAGVDGKLPAFTLHVIALSAFMQHAWWMLVLGIVAGAAGLRQAY
RTSSGFRCWLDTGLLKAPLAGKLLTKSSVARYARTLSTTFAAGVPLVQALDSVAGAVGNGPFKQAIEHMRHDVSNGMQLN
QSMLNSGLFPGMAIQLTAIGEESGTLEHMLEKVASHYEADVDHLVDNLTSLMEPLIMVVLGGIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=370315 NIBR502773_RS19555 WP_141156727.1 4248307..4249515(-) (pilC) [Pseudomonas sp. NIBRBAC000502773]
ATGGACAACGCTTCAACGATTTACGCCTGGGAAGGTATCAACCGTAAAGGGCGCAGGGTGTCCGGGCAAACCAAGGGGCA
CAACGCTGCCCTGGTCAAGGCACAACTGCGCCAGCAAGGGATCAGCCCCGGTCGTGTGCGCAAGCAATCCCCGCTGCTGC
CAAGCCTCACCCCATCAGTCAAAGCGGCTGACATCACGCTGTTCACGCGCCAACTGGCTGCATTGCTTAAGGCTGGAGTT
CCACTCCTGCAAGCCTTCGACATCATCAGCGAAGGCGTCGACAATCGCGCTGTGCGTGAGCAGGTGCTGGGACTTAAACA
GGCGATCGCCGCCGGCAGCAGCCTGGCTGAGGCATTACGCAAACAACCGCGTCATTTCGATGAGCTGTACTGCAACCTGG
TGGCCGCCGGCGAACAGGCCGGGGCGCTTGAGACACTGCTGGAGAGGGTGGCGATCCATCGGGAAAAGAGTGAGCAGCTC
AAGGCCAGGATCAAAAAGGCCATGACCTACCCCATTGCTGTCCTGGTGGTTGCCAGCCTGGTCACCGGCATACTGCTGGT
CCACGTGGTGCCGCAGTTCCAGGCCCTGTTCGCCGGAGTCGACGGCAAACTGCCGGCATTTACCTTGCACGTGATCGCCC
TGTCGGCGTTCATGCAGCACGCATGGTGGATGCTGGTATTGGGCATCGTCGCGGGAGCCGCTGGACTGCGCCAGGCCTAT
CGGACCTCGTCGGGGTTTCGCTGCTGGCTGGACACCGGTTTGTTGAAAGCGCCCCTGGCAGGCAAACTGCTGACAAAATC
CTCCGTGGCCCGCTACGCCCGCACGCTCTCCACGACCTTTGCCGCCGGTGTTCCACTGGTACAGGCATTGGACTCAGTCG
CGGGCGCCGTGGGAAACGGCCCGTTCAAACAGGCAATCGAACATATGCGTCACGATGTATCCAACGGAATGCAACTGAAT
CAATCCATGCTCAACAGCGGCCTGTTTCCCGGCATGGCGATCCAACTGACGGCGATCGGCGAAGAGTCGGGCACGCTGGA
ACACATGCTGGAAAAGGTCGCCAGCCATTATGAGGCTGACGTGGACCACCTGGTCGACAACCTCACCAGCCTGATGGAAC
CGTTGATCATGGTGGTGCTGGGGGGCATTGTCGGCGCGCTGGTCATCGCCATGTACTTGCCGGTCTTCCAACTGGGGAGT
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

60.202

98.756

0.595
  pilC Acinetobacter baumannii D1279779

53.671

98.259

0.527
  pilC Acinetobacter baylyi ADP1

53.03

98.507

0.522
  pilC Legionella pneumophila strain ERS1305867

48.737

98.507

0.48
  pilC Vibrio cholerae strain A1552

41.058

98.756

0.405
  pilC Vibrio campbellii strain DS40M4

39.34

98.01

0.386
  pilG Neisseria gonorrhoeae MS11

38.32

94.776

0.363

Multiple sequence alignment