Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   FY139_RS16125 Genome accession   NZ_CP048540
Coordinates   1257081..1257689 (-) Length   202 a.a.
NCBI ID   WP_020809782.1    Uniprot ID   A0ABD5LH27
Organism   Agrobacterium tumefaciens strain SJ002     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1252081..1262689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY139_RS16110 (FY139_16020) - 1252891..1253772 (-) 882 WP_099085387.1 alpha/beta fold hydrolase -
  FY139_RS16115 (FY139_16025) parE 1253997..1256111 (+) 2115 WP_099085386.1 DNA topoisomerase IV subunit B -
  FY139_RS16120 (FY139_16030) - 1256179..1257072 (+) 894 WP_099085385.1 NAD-dependent epimerase/dehydratase family protein -
  FY139_RS16125 (FY139_16035) clpP 1257081..1257689 (-) 609 WP_020809782.1 ATP-dependent Clp protease proteolytic subunit Regulator
  FY139_RS16130 (FY139_16040) - 1257733..1258089 (-) 357 WP_020809781.1 SRPBCC domain-containing protein -
  FY139_RS16135 (FY139_16045) - 1258086..1258400 (-) 315 WP_031233739.1 ArsR/SmtB family transcription factor -
  FY139_RS16140 (FY139_16050) - 1258557..1260116 (+) 1560 WP_020809779.1 phospholipase D family protein -
  FY139_RS16145 (FY139_16055) - 1260139..1260972 (-) 834 WP_003502949.1 response regulator -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22918.40 Da        Isoelectric Point: 6.2321

>NTDB_id=369355 FY139_RS16125 WP_020809782.1 1257081..1257689(-) (clpP) [Agrobacterium tumefaciens strain SJ002]
MRETMQLVPMVVEQSSRGERSFDIYSRLLRERIIFLNGEVNDTVSALVCAQLLFLEAENPKKPIHLYINSPGGMVTSGFA
MYDTMRYIRAPVHTLCMGTARSMGSFLLMAGEPGMRAALPNASILIHQPSGGFQGQASDMLIHAEEIRQTKHRMTRLYAE
HCGRSYEEFERAMDRDRFMTVQEALEWGLIDRILEVREDAAA

Nucleotide


Download         Length: 609 bp        

>NTDB_id=369355 FY139_RS16125 WP_020809782.1 1257081..1257689(-) (clpP) [Agrobacterium tumefaciens strain SJ002]
ATGCGCGAAACGATGCAACTCGTCCCTATGGTAGTCGAACAATCGTCAAGGGGAGAAAGGTCTTTCGACATCTACTCCCG
CCTGTTGCGCGAGAGGATCATCTTCCTCAACGGAGAGGTGAACGATACGGTTTCCGCGCTGGTCTGCGCGCAATTGCTGT
TTCTTGAAGCGGAAAACCCGAAGAAGCCGATCCATCTCTACATCAATTCGCCGGGTGGCATGGTGACCAGCGGTTTCGCC
ATGTATGACACCATGCGCTACATTCGCGCGCCGGTTCACACCTTGTGCATGGGGACGGCCCGTTCCATGGGCTCGTTCCT
GCTGATGGCGGGCGAACCCGGCATGCGGGCGGCGCTGCCCAATGCCAGCATCCTCATTCACCAGCCATCAGGCGGTTTTC
AGGGGCAGGCGTCGGACATGCTTATCCACGCCGAGGAAATCAGGCAGACAAAACACCGCATGACGCGGCTTTATGCCGAA
CATTGCGGGCGCAGCTACGAGGAGTTCGAGAGGGCGATGGATCGCGACCGGTTCATGACGGTGCAGGAGGCTCTGGAATG
GGGCCTGATCGACCGCATTCTGGAAGTCCGCGAGGATGCGGCGGCATAG

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(17-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0ABD5LH27

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

53.333

96.535

0.515
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.026

93.564

0.515
  clpP Lactococcus lactis subsp. cremoris KW2

49.738

94.554

0.47
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

48.168

94.554

0.455
  clpP Streptococcus pneumoniae Rx1

47.895

94.059

0.45
  clpP Streptococcus pneumoniae D39

47.895

94.059

0.45
  clpP Streptococcus pneumoniae R6

47.895

94.059

0.45
  clpP Streptococcus pneumoniae TIGR4

47.895

94.059

0.45
  clpP Streptococcus pyogenes MGAS315

46.392

96.04

0.446
  clpP Streptococcus pyogenes JRS4

46.392

96.04

0.446
  clpP Streptococcus mutans UA159

45

99.01

0.446
  clpP Streptococcus thermophilus LMG 18311

45.263

94.059

0.426
  clpP Streptococcus thermophilus LMD-9

45.263

94.059

0.426

Multiple sequence alignment