NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	FY139_RS14420	Genome accession	NZ_CP048540
Coordinates	901955..902587 (+)	Length	210 a.a.
NCBI ID	WP_003521529.1	Uniprot ID	A0A822V5P2
Organism	Agrobacterium tumefaciens strain SJ002
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 896955..907587

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FY139_RS14395 (FY139_14335)	-	897372..897713 (+)	342	WP_060724199.1	cupin domain-containing protein	-
FY139_RS14400 (FY139_14340)	-	897734..898048 (-)	315	WP_060724092.1	ArsR/SmtB family transcription factor	-
FY139_RS14405 (FY139_14345)	-	898174..898908 (+)	735	WP_233283370.1	SDR family NAD(P)-dependent oxidoreductase	-
FY139_RS14410 (FY139_14350)	-	898929..900182 (-)	1254	WP_060726153.1	cytochrome P450	-
FY139_RS14415 (FY139_14355)	-	900255..901502 (-)	1248	WP_099085475.1	sensor domain-containing diguanylate cyclase	-
FY139_RS14420 (FY139_14360)	clpP	901955..902587 (+)	633	WP_003521529.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
FY139_RS14425 (FY139_14365)	clpX	902881..904158 (+)	1278	WP_003496489.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
FY139_RS14430 (FY139_14370)	lon	904573..906990 (+)	2418	WP_003502358.1	endopeptidase La	-
FY139_RS14435 (FY139_14375)	hupB	907280..907555 (+)	276	WP_003502360.1	DNA-binding protein HupB	-

Sequence

Protein

Download Length: 210 a.a. Molecular weight: 23254.80 Da Isoelectric Point: 6.1201

                                >NTDB_id=369346 FY139_RS14420 WP_003521529.1 901955..902587(+) (clpP) [Agrobacterium tumefaciens strain SJ002]

MKNPVDTAMALVPMVVEQTNRGERSYDIFSRLLKERIIFLTGPVEDQMASLVCAQLLFLEAENPKKEIALYINSPGGVVT

AGMAIYDTMQFIRPAVSTLCVGQAASMGSLLLAAGEKGMRFATPNARIMVHQPSGGFQGQASDIERHARDIIKMKRRLNE

VYVKHTGRTLEEVEKTLDRDHFMDADEAKDWGVIDKILTSRQEIEGAAAN

Nucleotide

Download Length: 633 bp

                                >NTDB_id=369346 FY139_RS14420 WP_003521529.1 901955..902587(+) (clpP) [Agrobacterium tumefaciens strain SJ002]

ATGAAAAATCCAGTTGATACCGCCATGGCTCTGGTGCCGATGGTCGTAGAGCAGACCAATCGCGGCGAACGCTCCTACGA

CATATTTTCCCGTCTTCTCAAGGAACGCATCATTTTCCTCACCGGTCCGGTGGAAGACCAGATGGCGTCGCTCGTCTGCG

CGCAGCTTCTTTTCCTCGAGGCTGAAAACCCGAAGAAGGAAATCGCGCTCTACATCAATTCGCCGGGTGGCGTCGTGACC

GCCGGCATGGCGATCTACGATACGATGCAGTTCATCCGCCCTGCGGTTTCCACGCTCTGCGTCGGTCAGGCCGCGTCCAT

GGGCTCGCTGCTTCTGGCTGCCGGGGAAAAGGGAATGCGCTTCGCCACCCCGAACGCCCGCATCATGGTTCACCAGCCGT

CCGGCGGTTTCCAGGGCCAGGCATCGGATATCGAGCGCCACGCCCGTGACATCATCAAGATGAAGCGTCGCCTGAATGAA

GTCTACGTGAAGCATACTGGCCGCACGCTCGAAGAGGTTGAAAAAACCCTTGATCGCGACCATTTCATGGATGCAGACGA

GGCGAAGGACTGGGGCGTGATCGACAAGATCCTGACCTCGCGCCAGGAAATCGAAGGCGCCGCCGCGAATTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(21-200)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A822V5P2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	60	92.857	0.557
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.915	89.524	0.51
clpP	Lactococcus lactis subsp. cremoris KW2	52.105	90.476	0.471
clpP	Streptococcus mutans UA159	49.231	92.857	0.457
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	50.526	90.476	0.457
clpP	Streptococcus pyogenes JRS4	48.969	92.381	0.452
clpP	Streptococcus pyogenes MGAS315	48.969	92.381	0.452
clpP	Streptococcus thermophilus LMG 18311	48.454	92.381	0.448
clpP	Streptococcus thermophilus LMD-9	48.454	92.381	0.448
clpP	Streptococcus pneumoniae Rx1	48.705	91.905	0.448
clpP	Streptococcus pneumoniae D39	48.705	91.905	0.448
clpP	Streptococcus pneumoniae R6	48.705	91.905	0.448
clpP	Streptococcus pneumoniae TIGR4	48.705	91.905	0.448

Detailed information NTG0369346