Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   FY144_RS06090 Genome accession   NZ_CP048518
Coordinates   1227273..1227881 (-) Length   202 a.a.
NCBI ID   WP_060725770.1    Uniprot ID   A0A822UY86
Organism   Agrobacterium tumefaciens strain Sta005     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1222273..1232881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY144_RS06075 (FY144_06020) - 1223077..1223958 (-) 882 WP_060725773.1 alpha/beta fold hydrolase -
  FY144_RS06080 (FY144_06025) parE 1224183..1226306 (+) 2124 WP_065695399.1 DNA topoisomerase IV subunit B -
  FY144_RS06085 (FY144_06030) - 1226374..1227264 (+) 891 WP_060725771.1 NAD-dependent epimerase/dehydratase family protein -
  FY144_RS06090 (FY144_06035) clpP 1227273..1227881 (-) 609 WP_060725770.1 ATP-dependent Clp protease proteolytic subunit Regulator
  FY144_RS06095 (FY144_06040) - 1227925..1228281 (-) 357 WP_060725769.1 SRPBCC domain-containing protein -
  FY144_RS06100 (FY144_06045) - 1228278..1228592 (-) 315 WP_003502944.1 ArsR/SmtB family transcription factor -
  FY144_RS06105 (FY144_06050) - 1228749..1230305 (+) 1557 WP_065695400.1 phospholipase D family protein -
  FY144_RS06110 (FY144_06055) - 1230328..1231161 (-) 834 WP_060725838.1 response regulator -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22904.38 Da        Isoelectric Point: 6.2314

>NTDB_id=369169 FY144_RS06090 WP_060725770.1 1227273..1227881(-) (clpP) [Agrobacterium tumefaciens strain Sta005]
MRETMQLVPMVVEQSSRGERSFDIYSRLLRERIIFLNGEVNDTVSALVCAQLLFLEAENPKKPIHLYINSPGGMVTSGFA
MYDTMRYIRAPVHTLCMGTARSMGSFLLMAGEPGMRAALPNASILIHQPSGGFQGQASDMLIHAEEIRQTKHRMTRLYAE
HCGRSYEDFERAMDRDRFMTVQEALEWGLIDRILEVREDAAA

Nucleotide


Download         Length: 609 bp        

>NTDB_id=369169 FY144_RS06090 WP_060725770.1 1227273..1227881(-) (clpP) [Agrobacterium tumefaciens strain Sta005]
ATGCGAGAAACGATGCAACTCGTCCCTATGGTAGTCGAACAGTCGTCAAGGGGAGAAAGGTCTTTCGACATCTACTCCCG
CCTGTTGCGCGAGAGGATCATCTTCCTCAACGGAGAGGTGAACGATACGGTTTCCGCGCTGGTTTGCGCGCAATTGCTGT
TTCTTGAAGCGGAAAACCCGAAGAAGCCGATCCATCTCTACATCAATTCGCCGGGTGGCATGGTGACCAGCGGTTTCGCC
ATGTATGACACCATGCGCTACATTCGCGCGCCGGTGCATACCTTGTGCATGGGGACGGCCCGTTCCATGGGCTCGTTCCT
GCTGATGGCGGGCGAACCCGGCATGCGGGCGGCGCTGCCCAATGCCAGCATCCTCATTCACCAGCCATCAGGCGGTTTTC
AGGGGCAGGCGTCGGACATGCTTATCCACGCCGAGGAAATCAGGCAGACAAAACACCGCATGACGCGGCTTTACGCCGAA
CATTGCGGGCGCAGCTACGAGGATTTCGAGAGGGCGATGGATCGCGACCGCTTCATGACGGTGCAGGAGGCTCTGGAATG
GGGCCTGATCGACCGCATTCTGGAAGTCCGCGAGGATGCGGCGGCATAG

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(17-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A822UY86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

53.333

96.535

0.515
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.026

93.564

0.515
  clpP Lactococcus lactis subsp. cremoris KW2

49.738

94.554

0.47
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

48.168

94.554

0.455
  clpP Streptococcus pneumoniae Rx1

47.895

94.059

0.45
  clpP Streptococcus pneumoniae D39

47.895

94.059

0.45
  clpP Streptococcus pneumoniae R6

47.895

94.059

0.45
  clpP Streptococcus pneumoniae TIGR4

47.895

94.059

0.45
  clpP Streptococcus pyogenes MGAS315

46.392

96.04

0.446
  clpP Streptococcus pyogenes JRS4

46.392

96.04

0.446
  clpP Streptococcus mutans UA159

45

99.01

0.446
  clpP Streptococcus thermophilus LMG 18311

45.263

94.059

0.426
  clpP Streptococcus thermophilus LMD-9

45.263

94.059

0.426