Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   FIU14_RS00735 Genome accession   NZ_CP040998
Coordinates   143199..143645 (+) Length   148 a.a.
NCBI ID   WP_001790850.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDAARGOS_773     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 138199..148645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU14_RS00700 (FIU14_00700) - 138693..138896 (+) 204 WP_000087561.1 YqgQ family protein -
  FIU14_RS00705 (FIU14_00705) - 138893..139879 (+) 987 WP_000161314.1 ROK family glucokinase -
  FIU14_RS00710 (FIU14_00710) - 139879..140208 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  FIU14_RS00715 (FIU14_00715) - 140205..140828 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  FIU14_RS00720 (FIU14_00720) comGA 140880..141854 (+) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  FIU14_RS00725 (FIU14_00725) comGB 141826..142896 (+) 1071 Protein_143 competence type IV pilus assembly protein ComGB -
  FIU14_RS00730 (FIU14_00730) comGC 142910..143221 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  FIU14_RS00735 (FIU14_00735) comGD 143199..143645 (+) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  FIU14_RS00740 (FIU14_00740) comGE 143632..143931 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  FIU14_RS00745 (FIU14_00745) comGF 143849..144346 (+) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  FIU14_RS00750 (FIU14_00750) - 144443..144589 (+) 147 WP_001789879.1 hypothetical protein -
  FIU14_RS00755 (FIU14_00755) - 144579..145103 (+) 525 WP_001015117.1 shikimate kinase -
  FIU14_RS00760 (FIU14_00760) gcvT 145262..146353 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  FIU14_RS00765 (FIU14_00765) gcvPA 146373..147719 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17213.42 Da        Isoelectric Point: 10.3682

>NTDB_id=368646 FIU14_RS00735 WP_001790850.1 143199..143645(+) (comGD) [Staphylococcus aureus strain FDAARGOS_773]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIYNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=368646 FIU14_RS00735 WP_001790850.1 143199..143645(+) (comGD) [Staphylococcus aureus strain FDAARGOS_773]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTTACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment