Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GZH78_RS28955 Genome accession   NZ_CP048408
Coordinates   6410237..6411730 (+) Length   497 a.a.
NCBI ID   WP_163976793.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain DR397     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6405237..6416730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZH78_RS28930 (GZH78_28940) - 6405503..6405928 (-) 426 WP_011336526.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  GZH78_RS28935 (GZH78_28945) - 6406144..6407481 (-) 1338 WP_007951904.1 ammonium transporter -
  GZH78_RS28940 (GZH78_28950) glnK 6407519..6407857 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  GZH78_RS28945 (GZH78_28955) - 6408256..6408516 (+) 261 WP_163976792.1 accessory factor UbiK family protein -
  GZH78_RS28950 (GZH78_28960) - 6408912..6409430 (+) 519 WP_039765253.1 Bro-N domain-containing protein -
  GZH78_RS28955 (GZH78_28965) comM 6410237..6411730 (+) 1494 WP_163976793.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GZH78_RS28960 (GZH78_28970) - 6411834..6413810 (-) 1977 WP_039765249.1 methyl-accepting chemotaxis protein -
  GZH78_RS28965 (GZH78_28975) - 6413991..6414911 (-) 921 WP_039765247.1 LysR substrate-binding domain-containing protein -
  GZH78_RS28970 (GZH78_28980) - 6415070..6416464 (+) 1395 WP_074690005.1 NorM family multidrug efflux MATE transporter -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52850.03 Da        Isoelectric Point: 8.2051

>NTDB_id=368646 GZH78_RS28955 WP_163976793.1 6410237..6411730(+) (comM) [Pseudomonas fluorescens strain DR397]
MSLAIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRTLVVPRANAEEACLASGLRVIAVDHL
LEAVAHFNGHTPVEPYVSDGLIHAAKPYPDLNEVQGQLAAKRALLIAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLTE
SEALEVAAIQSVASGAPLTHWPQRPFRQPHHSASGPALVGGSSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GCIVIARAKERVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPAVKP
GEDSASAATLVAEARERQQKRQGCANAFLDLPGLKKHCKLSTADETWLETACERLTLSLRSAHRLLKVARTLADLEKRAD
ISREHLAEALQYRPATQ

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=368646 GZH78_RS28955 WP_163976793.1 6410237..6411730(+) (comM) [Pseudomonas fluorescens strain DR397]
ATGTCCCTCGCCATCGTCCACAGCCGCGCCCAGATTGGCGTGGATGCCCCCGCCGTCACCGTCGAAGTCCACCTGGCCAA
CGGCCTGCCCTCGCTGACCATGGTCGGCCTGCCTGAAGCGGCGGTGAAAGAGAGCAAGGATCGGGTGCGCAGTGCGATCA
TCAATTCCGGGCTGCAGTTTCCGGCGCGGCGGATCACTCTGAATCTGGCACCGGCGGATCTGCCCAAGGATGGCGGGCGG
TTCGATCTGGCGATTGCGCTGGGGATTCTGTCGGCGAGCGTGCAGGTGCCGACCTTGACGCTGGATGACGTGGAGTGCCT
TGGCGAACTGGCGTTGTCCGGCGCCGTGCGGGCGGTGCGCGGGGTGTTGCCGGCGGCACTGGCAGCGCGCAAGGCCGGGC
GGACGCTGGTGGTGCCGCGGGCGAATGCCGAAGAGGCGTGTCTGGCGTCGGGACTGAGGGTGATTGCGGTGGATCATCTG
CTGGAGGCTGTGGCGCATTTCAACGGGCATACGCCAGTCGAGCCTTATGTCTCGGACGGGCTGATCCATGCTGCCAAACC
TTATCCCGACCTGAATGAAGTACAGGGCCAACTGGCGGCCAAACGGGCGCTGCTGATTGCCGCCGCCGGTGCCCACAACC
TGCTGCTCAGCGGGCCACCGGGGACGGGCAAGACATTGCTGGCCAGTCGTTTGCCAGGGCTGCTGCCACCGCTGACCGAG
AGTGAAGCGCTGGAAGTGGCGGCGATTCAATCCGTCGCCAGCGGCGCGCCGCTGACTCACTGGCCGCAACGCCCGTTCCG
CCAACCGCATCACTCGGCTTCCGGGCCGGCATTGGTCGGTGGCAGTTCAAAACCTCAGCCCGGCGAAATCACCCTCGCCC
ATCACGGCGTGCTGTTTCTCGATGAGCTGCCCGAGTTTGATCGCAAGGTGCTGGAGGTGCTGCGCGAACCGCTGGAATCC
GGCTGCATCGTGATCGCAAGGGCCAAGGAACGGGTGCGGTTTCCCGCGAGATTCCAATTGGTGGCGGCGATGAATCCCTG
CCCCTGTGGATATCTCGGCGAACCGAGCGGCAAATGCTCATGCACACCGGACATGGTGCAGCGCTATCGCAACAAACTGT
CGGGGCCGTTGCTGGACCGGATCGATTTGCACCTGACGGTGGCGCGGGAGGCGACAGCGTTGAACCCGGCGGTGAAACCG
GGAGAGGACAGCGCCAGCGCGGCCACGCTGGTTGCCGAAGCCCGTGAGCGTCAGCAAAAACGCCAGGGCTGTGCCAATGC
ATTTCTCGATTTGCCGGGGCTGAAGAAGCACTGCAAGTTATCCACAGCCGATGAAACCTGGCTGGAGACGGCGTGCGAAA
GACTGACCTTGTCGCTGCGCTCGGCGCATCGGTTGCTCAAGGTCGCGCGGACGCTGGCGGATCTGGAGAAGCGCGCGGAT
ATCAGTCGCGAGCATCTGGCCGAAGCGTTGCAGTATCGGCCGGCGACTCAGTAA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

54.747

99.598

0.545
  comM Vibrio cholerae strain A1552

54.747

99.598

0.545
  comM Acinetobacter baylyi ADP1

54.545

99.598

0.543
  comM Vibrio campbellii strain DS40M4

54.343

99.598

0.541
  comM Haemophilus influenzae Rd KW20

53.106

100

0.533
  comM Glaesserella parasuis strain SC1401

52.59

100

0.531
  comM Legionella pneumophila str. Paris

50.2

100

0.505
  comM Legionella pneumophila strain ERS1305867

50.2

100

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.817

100

0.463
  comM Helicobacter pylori 26695

36.874

100

0.37

Multiple sequence alignment