Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   SSPS47_RS10010 Genome accession   NZ_CP048397
Coordinates   2274364..2274969 (-) Length   201 a.a.
NCBI ID   WP_203558053.1    Uniprot ID   -
Organism   Streptomyces sp. S4.7     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 2269364..2279969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSPS47_RS09995 (SSPS47_10145) - 2271158..2272102 (+) 945 WP_164250356.1 hypothetical protein -
  SSPS47_RS10000 (SSPS47_10150) clpX 2272181..2273473 (-) 1293 WP_078077342.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  SSPS47_RS10005 (SSPS47_10155) clpP 2273627..2274310 (-) 684 WP_164250358.1 ATP-dependent Clp protease proteolytic subunit Regulator
  SSPS47_RS10010 (SSPS47_10160) clpP 2274364..2274969 (-) 606 WP_203558053.1 ATP-dependent Clp protease proteolytic subunit Regulator
  SSPS47_RS10015 (SSPS47_10165) tig 2275247..2276683 (-) 1437 WP_164250362.1 trigger factor -
  SSPS47_RS10030 (SSPS47_10180) - 2277263..2277457 (-) 195 WP_147875291.1 hypothetical protein -
  SSPS47_RS10035 (SSPS47_10185) - 2277918..2279117 (+) 1200 WP_164250364.1 acyltransferase family protein -
  SSPS47_RS10040 (SSPS47_10190) - 2279094..2279543 (-) 450 WP_164250366.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21110.92 Da        Isoelectric Point: 4.3926

>NTDB_id=368504 SSPS47_RS10010 WP_203558053.1 2274364..2274969(-) (clpP) [Streptomyces sp. S4.7]
MPFAAGEPSLGGGLGDQVYSRLLGERIIFLGQQVDDDIANKITAQLLLLAAEPEKDIYLYINSPGGSVTAGMAVYDTMQY
IPNDVVTIGMGMAASMGQFLLTGGTAGKRFALPNTDILMHQGSAGLGGTASDIKIQAEQLLRTKKRMAEITARHTGQTEE
TIIRDGDRDRWFTAEEAVSYGIIDEIISAASGVPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=368504 SSPS47_RS10010 WP_203558053.1 2274364..2274969(-) (clpP) [Streptomyces sp. S4.7]
ATGCCTTTCGCCGCCGGTGAGCCGTCCCTCGGTGGTGGCCTCGGCGACCAGGTCTACAGCCGACTGCTCGGTGAGCGGAT
CATCTTCCTCGGCCAGCAGGTCGACGACGACATCGCCAACAAGATCACCGCGCAGCTCCTTCTCCTCGCGGCCGAGCCCG
AGAAGGACATCTACCTCTACATCAACAGCCCCGGTGGTTCCGTCACGGCGGGCATGGCGGTCTACGACACCATGCAGTAC
ATCCCGAACGACGTGGTGACCATCGGCATGGGCATGGCGGCCTCCATGGGCCAGTTCCTGCTGACCGGCGGCACCGCCGG
CAAGCGCTTCGCGCTGCCCAACACCGACATCCTCATGCACCAGGGCTCCGCGGGCCTCGGCGGCACCGCCTCCGACATCA
AGATCCAGGCCGAGCAGCTCCTGCGTACGAAGAAGCGCATGGCCGAGATCACCGCCCGCCACACGGGTCAGACCGAGGAG
ACCATCATCCGCGACGGTGACCGCGACCGCTGGTTCACCGCCGAGGAAGCCGTGTCCTACGGCATCATCGACGAGATCAT
CTCCGCTGCTTCGGGTGTTCCGGGCGGCGGCGGCACCGGCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Lactococcus lactis subsp. cremoris KW2

51.596

93.532

0.483
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.064

93.532

0.478
  clpP Bacillus subtilis subsp. subtilis str. 168

55.814

85.572

0.478
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.738

95.025

0.473
  clpP Streptococcus mutans UA159

53.179

86.07

0.458
  clpP Streptococcus pyogenes MGAS315

52.023

86.07

0.448
  clpP Streptococcus pyogenes JRS4

52.023

86.07

0.448
  clpP Streptococcus pneumoniae Rx1

49.718

88.06

0.438
  clpP Streptococcus pneumoniae D39

49.718

88.06

0.438
  clpP Streptococcus pneumoniae R6

49.718

88.06

0.438
  clpP Streptococcus pneumoniae TIGR4

49.718

88.06

0.438
  clpP Streptococcus thermophilus LMG 18311

50.575

86.567

0.438
  clpP Streptococcus thermophilus LMD-9

50.575

86.567

0.438