Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   FHI56_RS09445 Genome accession   NZ_CP040804
Coordinates   1811053..1813023 (-) Length   656 a.a.
NCBI ID   WP_070576843.1    Uniprot ID   A0A4Q5C4P0
Organism   Streptococcus salivarius strain LAB813     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1806053..1818023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHI56_RS09425 (FHI56_09425) amiF 1806556..1807485 (-) 930 WP_002886847.1 ATP-binding cassette domain-containing protein Regulator
  FHI56_RS09430 (FHI56_09430) amiE 1807478..1808563 (-) 1086 WP_149561434.1 ABC transporter ATP-binding protein Regulator
  FHI56_RS09435 (FHI56_09435) amiD 1808573..1809499 (-) 927 WP_149561435.1 oligopeptide ABC transporter permease OppC Regulator
  FHI56_RS09440 (FHI56_09440) amiC 1809499..1810992 (-) 1494 WP_014634823.1 ABC transporter permease Regulator
  FHI56_RS09445 (FHI56_09445) amiA 1811053..1813023 (-) 1971 WP_070576843.1 peptide ABC transporter substrate-binding protein Regulator
  FHI56_RS09450 (FHI56_09450) amiA 1813204..1815174 (-) 1971 WP_149561436.1 peptide ABC transporter substrate-binding protein Regulator
  FHI56_RS09455 (FHI56_09455) pta 1815410..1816393 (-) 984 WP_049527681.1 phosphate acetyltransferase -
  FHI56_RS09460 (FHI56_09460) - 1816407..1817303 (-) 897 WP_149561437.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72919.32 Da        Isoelectric Point: 5.2837

>NTDB_id=367368 FHI56_RS09445 WP_070576843.1 1811053..1813023(-) (amiA) [Streptococcus salivarius strain LAB813]
MKKSKWLALAGVSLLSVGVLVACSSKSNTSSNTYNYVYTADPETLDYLISNKGSTTDAVTNGVDGLLENDKYGNLVPAIA
KDWTVSADGLTYTYKLRKGVKWYTSDGEEYAEVTAKDFVTGLKHAADKKTESIYLAKDSVVGLADYFNGTDKDFSKVGVK
ALDDYTLQYTLKQPEPYWNSKMTYSLFWPVNEEFLKSKGDSFGKSTDPSSILYNGPYILKSLTAKSSIELAKNENYWDKK
NVHFDGIKLSFYDASDQESLVRNFTDGAYSQARLYPTSSNFNSVEKQYKDNIFYTQPSADIGGVGVNIDRQSYNHTSKKT
DAEKDSTKKALLNKDFRQSVNFAIDRTAYSAQLNGEKGAALAVRNLLVKPDFVYAGDKSFGDLVTEKMPSYGDEWSGVNL
KDSQDGLFNADKAKTEFNKAKEALQAQGVQFPIHLDLPVDQAAKPTVARAQSLKQSVEKTLGKENVVVDVHQMSQDDLLN
STLYAANAAAEDWDINISVAWAPDYEDPSTFLDIFKTTASENTKTYMGFDDPNNAAAAQVGLKDFDALVDNAAKETSDLN
VRYERYAEAQAWLEDSSLFMPLMVNKGAAPMVARLTPFSGAYSQVGPKGSDRYFKYLEPQKDVVTKKNYDKARESWLKEK
SKSNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=367368 FHI56_RS09445 WP_070576843.1 1811053..1813023(-) (amiA) [Streptococcus salivarius strain LAB813]
ATGAAAAAAAGTAAATGGTTGGCCCTTGCGGGTGTTTCCCTCCTTAGTGTTGGGGTTTTAGTGGCTTGCTCATCAAAATC
AAACACTTCAAGCAATACATACAACTATGTTTATACTGCTGACCCTGAGACATTGGATTACCTTATTTCCAATAAAGGTT
CAACAACTGATGCTGTGACAAATGGTGTCGATGGCCTTTTGGAAAATGATAAATATGGTAACTTGGTGCCTGCTATTGCC
AAGGATTGGACTGTTTCAGCTGATGGTTTGACTTATACTTACAAACTTCGTAAAGGAGTTAAATGGTATACTTCAGACGG
TGAAGAGTATGCAGAAGTAACAGCTAAAGACTTCGTAACAGGTCTTAAGCATGCTGCTGATAAAAAGACAGAGTCAATTT
ACTTGGCAAAAGATTCTGTAGTAGGTCTTGCTGATTATTTCAATGGTACTGATAAAGACTTCTCTAAAGTTGGTGTTAAA
GCACTTGATGATTACACTCTTCAGTACACACTTAAACAACCAGAACCTTACTGGAATTCTAAGATGACTTATTCTCTCTT
CTGGCCTGTAAATGAAGAGTTCCTTAAGTCAAAAGGGGATAGCTTTGGTAAATCAACAGATCCATCATCTATCCTTTATA
ATGGTCCTTACATCCTTAAGTCATTGACAGCTAAATCATCTATTGAGTTGGCTAAAAATGAAAACTATTGGGATAAGAAA
AATGTCCACTTCGATGGCATTAAACTTTCTTTCTATGATGCATCAGACCAAGAATCGCTTGTTCGTAATTTCACTGATGG
CGCTTATAGTCAAGCACGTCTATATCCAACAAGCTCAAACTTTAATTCAGTAGAAAAACAATATAAAGATAATATCTTCT
ATACACAACCATCTGCAGATATTGGTGGGGTTGGTGTTAATATTGACCGTCAGTCTTACAACCATACATCTAAGAAGACT
GATGCTGAAAAAGATTCAACTAAGAAAGCTCTTCTTAACAAGGACTTCCGTCAATCAGTTAACTTTGCTATTGACCGTAC
AGCTTACTCAGCACAACTTAATGGTGAAAAAGGTGCAGCACTTGCTGTTCGTAACCTTCTTGTGAAACCTGATTTTGTTT
ATGCTGGTGACAAGTCATTCGGTGATTTGGTAACTGAAAAGATGCCTTCATATGGTGACGAGTGGTCAGGTGTTAACCTT
AAAGACAGTCAAGATGGTCTCTTCAACGCTGATAAGGCTAAGACTGAATTTAATAAAGCTAAGGAAGCTCTCCAAGCACA
AGGTGTTCAATTCCCAATTCACTTGGACCTTCCAGTTGACCAAGCTGCGAAACCAACTGTAGCACGTGCACAATCTTTGA
AACAATCTGTTGAAAAGACACTTGGTAAAGAAAATGTGGTTGTAGACGTTCATCAAATGTCTCAAGATGATCTTCTTAAC
AGTACTTTGTATGCTGCTAACGCAGCAGCAGAAGACTGGGATATCAATATTTCAGTTGCTTGGGCACCTGACTACGAAGA
CCCATCAACATTCCTTGATATCTTCAAGACAACAGCTAGTGAGAACACAAAAACTTACATGGGATTTGACGATCCTAACA
ATGCAGCAGCAGCTCAAGTAGGTCTTAAAGACTTTGATGCTTTGGTTGATAATGCAGCTAAAGAAACAAGCGACCTCAAC
GTACGTTATGAACGTTATGCAGAGGCACAAGCTTGGTTGGAAGATAGCTCACTCTTCATGCCACTTATGGTTAACAAGGG
TGCTGCTCCAATGGTAGCTCGTTTGACACCATTCTCAGGTGCTTACTCTCAAGTAGGACCTAAGGGTTCTGACAGATACT
TCAAGTACCTTGAGCCTCAAAAAGATGTTGTCACTAAGAAAAACTATGATAAAGCCCGTGAAAGCTGGCTTAAAGAAAAG
TCTAAGTCCAACGAAAAAGCTCAAAAAGACCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q5C4P0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

75.305

100

0.753
  amiA3 Streptococcus thermophilus LMG 18311

75.038

100

0.752
  amiA3 Streptococcus thermophilus LMD-9

75.038

100

0.752

Multiple sequence alignment