Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   FHI56_RS09435 Genome accession   NZ_CP040804
Coordinates   1808573..1809499 (-) Length   308 a.a.
NCBI ID   WP_149561435.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LAB813     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1803573..1814499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHI56_RS09405 (FHI56_09405) - 1803654..1804448 (-) 795 WP_013990229.1 HAD-IIB family hydrolase -
  FHI56_RS09410 (FHI56_09410) - 1804630..1805007 (+) 378 WP_002884206.1 GntR family transcriptional regulator -
  FHI56_RS09415 (FHI56_09415) - 1805012..1805710 (+) 699 WP_002884466.1 ABC transporter ATP-binding protein -
  FHI56_RS09420 (FHI56_09420) - 1805722..1806507 (+) 786 WP_045772228.1 hypothetical protein -
  FHI56_RS09425 (FHI56_09425) amiF 1806556..1807485 (-) 930 WP_002886847.1 ATP-binding cassette domain-containing protein Regulator
  FHI56_RS09430 (FHI56_09430) amiE 1807478..1808563 (-) 1086 WP_149561434.1 ABC transporter ATP-binding protein Regulator
  FHI56_RS09435 (FHI56_09435) amiD 1808573..1809499 (-) 927 WP_149561435.1 oligopeptide ABC transporter permease OppC Regulator
  FHI56_RS09440 (FHI56_09440) amiC 1809499..1810992 (-) 1494 WP_014634823.1 ABC transporter permease Regulator
  FHI56_RS09445 (FHI56_09445) amiA 1811053..1813023 (-) 1971 WP_070576843.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34593.70 Da        Isoelectric Point: 9.7054

>NTDB_id=367366 FHI56_RS09435 WP_149561435.1 1808573..1809499(-) (amiD) [Streptococcus salivarius strain LAB813]
MASIDKSKFQFVKRDDFASETIDAPAYSYWKSVMRQFFKKKSTTVMLGILIAIILMSFIYPMFSKFDFNDVSKVNDFSVR
YVHPNAQYWFGTDSNGKSLFDSVWFGARNSILIAVIATFLNVAIGLVVGAVWGISKTFDMIMMEIYNIISNIPALLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRTLGTPTPKIVVKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=367366 FHI56_RS09435 WP_149561435.1 1808573..1809499(-) (amiD) [Streptococcus salivarius strain LAB813]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCGCCGGCCTA
TTCATACTGGAAATCAGTGATGCGTCAGTTCTTCAAGAAAAAGTCAACAACTGTTATGTTGGGAATCTTGATTGCTATCA
TTTTGATGAGCTTTATCTACCCAATGTTTTCAAAATTTGACTTCAATGACGTGTCTAAGGTTAATGACTTTAGTGTGCGT
TATGTGCATCCAAATGCTCAATACTGGTTCGGTACAGACAGTAATGGTAAGTCTCTCTTTGACAGTGTTTGGTTTGGAGC
TCGTAATTCTATCCTTATTGCTGTTATCGCTACCTTCCTTAACGTTGCTATTGGTTTAGTCGTTGGTGCTGTTTGGGGGA
TTTCTAAGACCTTTGATATGATTATGATGGAAATCTACAACATCATCTCAAACATCCCTGCCCTCCTTGTCGTTATCGTC
TTGACTTACTCATTGGGTGCTGGTTTCTGGAACATGATCTTTGCCATGACTGTCACAGGTTGGATTGGTATTGCCTATAC
TATTCGTATTCAAATCATGCGTTACCGTGATTTGGAGTACAACTTGGCTTCTCGTACTTTGGGAACACCAACTCCTAAGA
TTGTGGTTAAAAATATCATGCCACAACTTGTATCAGTTATCGTGACTATGGCTAGTCAGCTCTTGCCAGGATTTATCTCT
TACGAAGCCTTCCTTTCTTACTTTGGTTTGGGGCTTCCCGTTACAACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAAAACGTTACAGTCAATGCTTACCTCTTCTGGATTCCATTGACTACCTTGATCCTTGTTTCCCTTGCTCTCTTTATTG
TCGGTCAAAACTTGGCGGATGCCAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-70)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

99.026

100

0.99
  amiD Streptococcus thermophilus LMG 18311

96.429

100

0.964
  amiD Streptococcus thermophilus LMD-9

96.429

100

0.964

Multiple sequence alignment