Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   FHI56_RS09430 Genome accession   NZ_CP040804
Coordinates   1807478..1808563 (-) Length   361 a.a.
NCBI ID   WP_149561434.1    Uniprot ID   A0AB37CMQ5
Organism   Streptococcus salivarius strain LAB813     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1802478..1813563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHI56_RS09400 (FHI56_09400) - 1802843..1803661 (-) 819 WP_064521040.1 Cof-type HAD-IIB family hydrolase -
  FHI56_RS09405 (FHI56_09405) - 1803654..1804448 (-) 795 WP_013990229.1 HAD-IIB family hydrolase -
  FHI56_RS09410 (FHI56_09410) - 1804630..1805007 (+) 378 WP_002884206.1 GntR family transcriptional regulator -
  FHI56_RS09415 (FHI56_09415) - 1805012..1805710 (+) 699 WP_002884466.1 ABC transporter ATP-binding protein -
  FHI56_RS09420 (FHI56_09420) - 1805722..1806507 (+) 786 WP_045772228.1 hypothetical protein -
  FHI56_RS09425 (FHI56_09425) amiF 1806556..1807485 (-) 930 WP_002886847.1 ATP-binding cassette domain-containing protein Regulator
  FHI56_RS09430 (FHI56_09430) amiE 1807478..1808563 (-) 1086 WP_149561434.1 ABC transporter ATP-binding protein Regulator
  FHI56_RS09435 (FHI56_09435) amiD 1808573..1809499 (-) 927 WP_149561435.1 oligopeptide ABC transporter permease OppC Regulator
  FHI56_RS09440 (FHI56_09440) amiC 1809499..1810992 (-) 1494 WP_014634823.1 ABC transporter permease Regulator
  FHI56_RS09445 (FHI56_09445) amiA 1811053..1813023 (-) 1971 WP_070576843.1 peptide ABC transporter substrate-binding protein Regulator

Sequence


Protein


Download         Length: 361 a.a.        Molecular weight: 39907.62 Da        Isoelectric Point: 4.6526

>NTDB_id=367365 FHI56_RS09430 WP_149561434.1 1807478..1808563(-) (amiE) [Streptococcus salivarius strain LAB813]
MTENKNVILSARDIVVEFDVRDRVLTAIRGVSLDLVEGEVLALVGESGSGKSVLTKTFTGMLEENGRVASGSIDYRGQDL
TKLKSHQDWAAIRGAKIATIFQDPMTSLDPIKTIGSQIVEVIVKHQGKSAKEAKKMAIDYMDKVGIPDAEKRFNEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKSLKEEYGFSVIFITHDLGVVASIADKVAVMYAGEIIE
YATVEEIFYEPCHPYTWSLLSSLPQLADDKGELFSIPGTPPSLYTPVVGDAFALRSDYAMQIDFEEKAPQFQVSDTHWAK
TWLLHEDAPKVEKPAVIQNLHEKIRANMGFAHLGDEEEGNA

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=367365 FHI56_RS09430 WP_149561434.1 1807478..1808563(-) (amiE) [Streptococcus salivarius strain LAB813]
ATGACAGAAAATAAAAATGTAATATTATCGGCTCGCGATATCGTCGTGGAATTTGACGTTCGTGACCGTGTTTTGACAGC
TATTCGAGGGGTTTCCCTTGATTTGGTAGAAGGTGAAGTTTTAGCCTTAGTTGGTGAGTCTGGTTCAGGTAAATCAGTTT
TGACTAAGACCTTCACAGGGATGCTTGAAGAAAATGGTCGTGTCGCTAGTGGTTCTATTGATTATCGCGGACAAGATTTG
ACCAAGCTTAAGAGTCACCAAGATTGGGCAGCAATTCGTGGAGCTAAGATTGCAACTATCTTCCAAGATCCGATGACCAG
TCTTGACCCAATTAAGACTATCGGTAGTCAAATTGTTGAAGTCATTGTCAAACACCAAGGAAAATCAGCTAAAGAAGCTA
AAAAAATGGCCATTGATTACATGGATAAGGTTGGTATTCCCGATGCTGAAAAACGTTTCAACGAATATCCTTTCCAATAC
TCTGGTGGGATGCGTCAACGTATTGTTATTGCCATTGCCTTGGCTTGTCGTCCCGATATCCTTATCTGTGACGAACCAAC
AACTGCTCTCGATGTGACCATTCAAGCTCAAATCATCGACCTCTTGAAATCACTCAAAGAGGAGTATGGTTTCTCAGTGA
TTTTCATTACCCATGACCTTGGTGTGGTAGCAAGTATCGCAGACAAGGTTGCTGTTATGTATGCTGGTGAAATCATTGAG
TATGCAACTGTTGAGGAGATTTTCTATGAGCCTTGTCATCCATACACGTGGAGCTTGCTTTCAAGCTTGCCACAGTTGGC
TGATGATAAGGGTGAGCTTTTCTCAATTCCAGGGACACCACCATCACTTTATACACCAGTTGTTGGAGATGCCTTTGCCT
TGCGTTCAGACTATGCTATGCAGATTGACTTCGAGGAAAAAGCACCGCAATTCCAAGTTTCAGATACTCACTGGGCTAAG
ACCTGGCTCTTACATGAGGATGCACCAAAAGTTGAAAAACCTGCGGTTATCCAAAATCTACATGAAAAAATCCGTGCTAA
TATGGGATTTGCACATTTAGGAGATGAGGAGGAAGGCAATGCCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

99.446

100

0.994

  amiE Streptococcus thermophilus LMG 18311

96.953

100

0.97

  amiE Streptococcus thermophilus LMD-9

96.953

100

0.97

  oppD Streptococcus mutans UA159

54.728

96.676

0.529


Multiple sequence alignment