Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   FHI56_RS09425 Genome accession   NZ_CP040804
Coordinates   1806556..1807485 (-) Length   309 a.a.
NCBI ID   WP_002886847.1    Uniprot ID   A0AB37CQR1
Organism   Streptococcus salivarius strain LAB813     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1801556..1812485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHI56_RS09400 (FHI56_09400) - 1802843..1803661 (-) 819 WP_064521040.1 Cof-type HAD-IIB family hydrolase -
  FHI56_RS09405 (FHI56_09405) - 1803654..1804448 (-) 795 WP_013990229.1 HAD-IIB family hydrolase -
  FHI56_RS09410 (FHI56_09410) - 1804630..1805007 (+) 378 WP_002884206.1 GntR family transcriptional regulator -
  FHI56_RS09415 (FHI56_09415) - 1805012..1805710 (+) 699 WP_002884466.1 ABC transporter ATP-binding protein -
  FHI56_RS09420 (FHI56_09420) - 1805722..1806507 (+) 786 WP_045772228.1 hypothetical protein -
  FHI56_RS09425 (FHI56_09425) amiF 1806556..1807485 (-) 930 WP_002886847.1 ATP-binding cassette domain-containing protein Regulator
  FHI56_RS09430 (FHI56_09430) amiE 1807478..1808563 (-) 1086 WP_149561434.1 ABC transporter ATP-binding protein Regulator
  FHI56_RS09435 (FHI56_09435) amiD 1808573..1809499 (-) 927 WP_149561435.1 oligopeptide ABC transporter permease OppC Regulator
  FHI56_RS09440 (FHI56_09440) amiC 1809499..1810992 (-) 1494 WP_014634823.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35032.08 Da        Isoelectric Point: 6.5101

>NTDB_id=367364 FHI56_RS09425 WP_002886847.1 1806556..1807485(-) (amiF) [Streptococcus salivarius strain LAB813]
MPEKLVEVKDVEISFGEGSKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGHLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEDRKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKAEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=367364 FHI56_RS09425 WP_002886847.1 1806556..1807485(-) (amiF) [Streptococcus salivarius strain LAB813]
ATGCCTGAGAAGTTAGTTGAAGTAAAAGATGTGGAGATTTCCTTCGGTGAAGGAAGCAAGAAATTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTTTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACTACTATCGGTCGTG
CCATTATTGGTCTGAATGATACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAAATCAATGGGCACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCAACAGTTGA
TTATATCTTGTCTGAGGGCTTGTATAACTTCCATCTCTATAAGGATGAGGAAGATCGTAAAGCCAAAATCAAGGAAATCA
TCAAAGAAGTGGGACTTCTTGAGGAACACTTGACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGT
ATTGCGCGTTCCTTGGTTATGCAACCTGACTTGGTCATCGCTGACGAACCAATCTCAGCCCTTGACGTGTCAGTCCGTGC
CCAAGTTTTGAACTTGCTTAAGAAATTCCAAAAAGAGTTGGGATTGACCTACCTCTTTATCGCTCACGACTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATTTACAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAACTCTACAAC
AATCCTATCCACCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGACCCGATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACATGACTATTCTGTTGATAAACCAGAGATGGTTGAAGTACGTCCAGGACACTTCGTTT
GGGGTAACAAGGCCGAGATCGAGACTTATCGTAAAGAACAAAGTAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(26-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

99.353

100

0.994
  amiF Streptococcus thermophilus LMG 18311

98.706

100

0.987
  amiF Streptococcus thermophilus LMD-9

98.382

100

0.984

Multiple sequence alignment