Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   FHI56_RS09450 Genome accession   NZ_CP040804
Coordinates   1813204..1815174 (-) Length   656 a.a.
NCBI ID   WP_149561436.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LAB813     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1808204..1820174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHI56_RS09435 (FHI56_09435) amiD 1808573..1809499 (-) 927 WP_149561435.1 oligopeptide ABC transporter permease OppC Regulator
  FHI56_RS09440 (FHI56_09440) amiC 1809499..1810992 (-) 1494 WP_014634823.1 ABC transporter permease Regulator
  FHI56_RS09445 (FHI56_09445) amiA 1811053..1813023 (-) 1971 WP_070576843.1 peptide ABC transporter substrate-binding protein Regulator
  FHI56_RS09450 (FHI56_09450) amiA 1813204..1815174 (-) 1971 WP_149561436.1 peptide ABC transporter substrate-binding protein Regulator
  FHI56_RS09455 (FHI56_09455) pta 1815410..1816393 (-) 984 WP_049527681.1 phosphate acetyltransferase -
  FHI56_RS09460 (FHI56_09460) - 1816407..1817303 (-) 897 WP_149561437.1 RluA family pseudouridine synthase -
  FHI56_RS09465 (FHI56_09465) - 1817300..1818136 (-) 837 WP_084871190.1 NAD kinase -
  FHI56_RS09470 (FHI56_09470) - 1818108..1818782 (-) 675 WP_045768515.1 GTP pyrophosphokinase family protein -
  FHI56_RS09475 (FHI56_09475) - 1818878..1819453 (+) 576 WP_045768514.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 71917.83 Da        Isoelectric Point: 4.9191

>NTDB_id=367369 FHI56_RS09450 WP_149561436.1 1813204..1815174(-) (amiA) [Streptococcus salivarius strain LAB813]
MKKSKWLALAGVALLSVGALAACSSKSSTSGTTYGYIYNSDPETLDYITSNTGPTKTAVTNGVDGLMEADKYGNLVPSVA
EDWSVSQDGLTYTYKIRKGVKWYTSDGEEYADVTAKDFVTGLKHAADGKAGALYLVQDSIAGLSDYLSGANKDFSNVGVK
AIDDYTLQYTLKKPEPYWNSKTTYGLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELTKNENYWDKK
NVHFDAIKLSYYDGSDQESQERSFSDGGLSIARVFPMSSNYASVEKKYKDNIYYTAPGASTAAIGVNIDRQNYKFSAKKT
DAEKTSTKKALLNKDFRQSINFAIDRTAYQSQVNGKDGAALAIRNLFVPSDFVSAGDKTFGDLVTDKMSTYGDEWSGVNF
ADGQDGLYNAEKAKTEFAKAKEALQGEGVQFPIHLDLPVDQSSKLNVAQAQSLKQTIEKSLGSENVVIDINQLSSDDMQN
ATLNAANAAAEDWDISNGVVWGPDYQDPSTYLDIFKTTSSENTKTFMGYDDPNNAAAAQVGLKDYDALLDSAASETTDLN
ARYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLTPFTGASMQVGDKNSSDYFKYVKPQEKVVTKKEYEQSREKWLKEK
KASNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=367369 FHI56_RS09450 WP_149561436.1 1813204..1815174(-) (amiA) [Streptococcus salivarius strain LAB813]
ATGAAAAAAAGCAAATGGTTAGCCCTTGCGGGTGTGGCACTCCTCAGTGTAGGTGCCTTAGCGGCTTGTTCTTCTAAGTC
AAGTACTAGTGGAACGACTTATGGTTATATTTATAACTCAGATCCTGAAACTTTAGACTATATCACGTCAAATACTGGAC
CTACTAAGACTGCTGTAACTAACGGTGTAGATGGTCTTATGGAAGCAGATAAATATGGAAATCTTGTTCCTTCAGTAGCT
GAAGATTGGTCTGTCTCTCAAGATGGTCTTACTTATACCTATAAAATCCGTAAGGGTGTTAAATGGTATACTTCTGATGG
TGAAGAATATGCTGATGTGACTGCTAAGGACTTTGTGACTGGTCTTAAGCATGCGGCTGATGGCAAAGCTGGAGCTCTTT
ACTTGGTGCAAGATTCTATTGCTGGCTTGTCTGACTACCTCTCTGGTGCCAATAAAGATTTCTCAAATGTAGGCGTCAAA
GCAATCGACGATTATACATTGCAATACACCCTTAAAAAACCAGAACCATACTGGAACTCTAAAACAACTTATGGCTTGCT
CTTCCCAGTTAACGAAGACTTTCTTAAGAACAAAGGAAAAGATTTTGGTAAGTCAACAGACCCAACATCTATCCTCTATA
ATGGTCCTTTCCTTCTCAAATCTTTGACAGCTAAATCATCTATTGAGTTAACTAAGAATGAGAATTATTGGGATAAGAAA
AATGTGCATTTCGACGCTATCAAATTGTCATATTATGACGGATCTGACCAGGAATCACAAGAACGTAGTTTCTCTGATGG
CGGTCTCAGCATTGCACGTGTCTTCCCTATGAGCTCTAACTATGCGTCAGTAGAAAAGAAATATAAAGATAATATTTATT
ACACAGCGCCAGGTGCGTCTACAGCAGCTATTGGTGTGAATATTGACCGTCAAAACTATAAATTCTCAGCTAAGAAGACA
GATGCTGAAAAGACATCAACTAAGAAGGCTCTTCTAAACAAAGACTTCCGTCAATCAATCAACTTCGCTATTGACCGTAC
AGCCTATCAATCTCAAGTAAACGGTAAAGATGGGGCTGCTCTTGCTATACGTAACCTCTTTGTTCCTTCTGATTTTGTCA
GTGCAGGTGATAAGACCTTTGGTGACCTTGTGACAGACAAGATGAGCACTTACGGTGATGAATGGTCTGGTGTCAATTTT
GCGGATGGTCAAGATGGTCTCTACAATGCGGAAAAAGCTAAGACTGAGTTTGCCAAAGCCAAAGAAGCTCTTCAAGGTGA
AGGTGTTCAATTCCCAATTCACTTGGACCTTCCAGTTGATCAAAGTTCTAAACTTAATGTTGCTCAAGCTCAATCATTGA
AACAAACCATTGAAAAATCATTGGGCAGTGAAAATGTAGTTATCGATATCAACCAGTTGTCATCTGATGATATGCAAAAT
GCTACTCTTAATGCGGCTAATGCGGCAGCAGAAGACTGGGATATTTCAAACGGTGTGGTTTGGGGTCCAGACTATCAAGA
TCCATCAACTTACCTTGATATCTTTAAGACAACTTCAAGTGAAAATACCAAGACTTTCATGGGTTATGATGATCCAAACA
ATGCGGCCGCAGCCCAAGTAGGTCTTAAAGATTATGATGCCTTGCTTGATTCAGCAGCTTCAGAAACAACAGACCTCAAC
GCTCGTTACGACCGTTATGCTCAAGCTCAAGCTTGGTTGGAAGATAGCTCACTTGTCATTCCATTGACTGTTGGTAACGG
TGCAGCACCAGTTATCTCACGCTTGACACCATTTACGGGTGCTAGCATGCAAGTGGGTGATAAGAACTCATCAGACTACT
TCAAATATGTGAAACCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAAAAG
AAAGCATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

95.579

100

0.956
  amiA3 Streptococcus thermophilus LMG 18311

89.954

100

0.901
  amiA3 Streptococcus thermophilus LMD-9

89.802

100

0.899

Multiple sequence alignment