Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   FDP16_RS11710 Genome accession   NZ_CP040798
Coordinates   2340355..2341527 (+) Length   390 a.a.
NCBI ID   WP_176799746.1    Uniprot ID   A0A7H8V4E5
Organism   Streptococcus sanguinis strain CGMH058     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2335355..2346527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP16_RS11685 (FDP16_12160) comE 2337136..2337900 (-) 765 WP_002899424.1 competence system response regulator transcription factor ComE Regulator
  FDP16_RS11690 (FDP16_12165) comD 2337906..2339240 (-) 1335 WP_176799744.1 competence system sensor histidine kinase ComD -
  FDP16_RS11695 (FDP16_12170) - 2339268..2339375 (-) 108 WP_176799745.1 competence protein -
  FDP16_RS11705 (FDP16_12180) rlmH 2339672..2340151 (-) 480 WP_002928597.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  FDP16_RS11710 (FDP16_12185) htrA 2340355..2341527 (+) 1173 WP_176799746.1 S1C family serine protease Regulator
  FDP16_RS11715 (FDP16_12190) spo0J 2341591..2342352 (+) 762 WP_176799747.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 390 a.a.        Molecular weight: 40850.67 Da        Isoelectric Point: 4.6743

>NTDB_id=367255 FDP16_RS11710 WP_176799746.1 2340355..2341527(+) (htrA) [Streptococcus sanguinis strain CGMH058]
MKNSSNAIKKALLLFAVLIVGFIGGSLGNYVTTLLTSRVKMNGNSTTSVTTSYKNSTDISEAVKKVQNAVVSVITYAESS
SSVINDESSNDESQISSEGSGVIYKKDGKSAYLVTNTHVLNGSTNVDILLADGNKVPGEVVGSDVFSDISVVKISSEKVT
DVAEFGDSGSLTVGETAIAIGSPLGTEYANSVTQGIISSLGRNVTLQSENGENISTTALQTDAAINPGNSGGPLINIQGQ
VIGITSSKISTNGQTSVEGMGFAIPSDDVVNIINQLEKNGTVTRPALGIQMMDLSNLTTSDFSKLNLPTSVKSGILVRSV
QQGMPADGKLQKNDVITKVDNTDVESTSDLQSALYKHSIGDEVEITYYRDGKSQTVKIKLTKSTKELSPN

Nucleotide


Download         Length: 1173 bp        

>NTDB_id=367255 FDP16_RS11710 WP_176799746.1 2340355..2341527(+) (htrA) [Streptococcus sanguinis strain CGMH058]
ATGAAAAACTCTTCAAATGCCATCAAAAAGGCTTTATTGCTTTTTGCAGTATTAATTGTAGGTTTTATCGGCGGAAGTTT
AGGAAATTATGTTACTACATTACTAACTTCACGCGTAAAAATGAATGGAAATTCAACAACTAGTGTAACTACTTCATATA
AAAACTCTACAGACATTTCAGAAGCTGTGAAAAAGGTTCAAAATGCTGTTGTTTCAGTAATTACTTATGCTGAATCTTCC
AGCAGCGTTATCAATGATGAATCTTCCAACGATGAATCACAAATCTCCAGTGAAGGTTCTGGCGTAATTTATAAAAAAGA
CGGAAAATCAGCCTATCTGGTAACCAACACCCACGTTCTGAACGGATCAACCAATGTAGATATCTTGCTAGCTGATGGAA
ACAAGGTTCCAGGTGAAGTAGTTGGATCAGATGTTTTTTCAGATATCTCTGTCGTTAAAATTAGCTCTGAAAAAGTAACT
GATGTCGCAGAATTTGGAGATTCTGGTTCTCTGACAGTTGGTGAAACAGCAATCGCCATCGGAAGCCCTCTTGGAACAGA
ATACGCTAACTCAGTAACACAAGGAATTATTTCTAGTTTAGGCAGAAACGTTACCTTACAATCTGAAAATGGTGAAAATA
TTTCAACAACTGCACTGCAAACAGATGCTGCAATTAATCCTGGTAACTCTGGCGGCCCGTTGATTAACATCCAAGGACAA
GTTATTGGGATTACTTCAAGTAAAATTTCAACAAATGGCCAAACCTCTGTTGAAGGGATGGGATTTGCGATTCCATCTGA
TGATGTCGTAAATATTATCAATCAACTTGAGAAAAATGGAACAGTCACACGTCCTGCTTTAGGAATTCAAATGATGGATT
TATCTAATCTGACAACTTCTGATTTTTCTAAATTAAATCTTCCTACTTCAGTGAAATCAGGTATTCTTGTTCGCTCTGTT
CAGCAAGGGATGCCTGCTGATGGCAAACTTCAAAAAAATGATGTCATTACAAAAGTAGATAACACAGATGTGGAATCCAC
TAGTGACCTTCAGTCAGCTCTCTACAAGCATAGCATTGGAGATGAGGTAGAGATTACTTATTATCGAGATGGTAAATCTC
AAACAGTCAAAATCAAACTCACTAAATCAACAAAAGAGCTAAGCCCAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A7H8V4E5

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus gordonii str. Challis substr. CH1

66.835

100

0.677

  htrA Streptococcus mitis NCTC 12261

64.194

100

0.644

  htrA Streptococcus pneumoniae Rx1

64.194

100

0.644

  htrA Streptococcus pneumoniae D39

64.194

100

0.644

  htrA Streptococcus pneumoniae R6

64.194

100

0.644

  htrA Streptococcus pneumoniae TIGR4

64.194

100

0.644

  htrA Streptococcus mutans UA159

54.177

100

0.549


Multiple sequence alignment