Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0J   Type   Regulator
Locus tag   FDP16_RS11715 Genome accession   NZ_CP040798
Coordinates   2341591..2342352 (+) Length   253 a.a.
NCBI ID   WP_176799747.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain CGMH058     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2336591..2347352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP16_RS11685 (FDP16_12160) comE 2337136..2337900 (-) 765 WP_002899424.1 competence system response regulator transcription factor ComE Regulator
  FDP16_RS11690 (FDP16_12165) comD 2337906..2339240 (-) 1335 WP_176799744.1 competence system sensor histidine kinase ComD -
  FDP16_RS11695 (FDP16_12170) - 2339268..2339375 (-) 108 WP_176799745.1 competence protein -
  FDP16_RS11705 (FDP16_12180) rlmH 2339672..2340151 (-) 480 WP_002928597.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  FDP16_RS11710 (FDP16_12185) htrA 2340355..2341527 (+) 1173 WP_176799746.1 S1C family serine protease Regulator
  FDP16_RS11715 (FDP16_12190) spo0J 2341591..2342352 (+) 762 WP_176799747.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 253 a.a.        Molecular weight: 29423.16 Da        Isoelectric Point: 8.6742

>NTDB_id=367256 FDP16_RS11715 WP_176799747.1 2341591..2342352(+) (spo0J) [Streptococcus sanguinis strain CGMH058]
MENFQYIALKDIRTNPYQPRKEFSQKKIEELAASIKENGLIQPIILRKSSLFGYEILAGERRYRAVSFLGLETIPAVVKE
LSDDDMLKQAIIENLQREDLNPIEEAESYQNLIDKGLTHDEIAKIMGKSRPYISNIVRLLQLAKEVRQAIKEEEISQGHA
RLLVPLKEEEQLLWLEKICREDLSVRAVEKLLQQKKSFKKKPNKELFAKSEEEKIKKILGLEVSIQLKSQSKGKLIIPFE
SEEEYQRIINSFK

Nucleotide


Download         Length: 762 bp        

>NTDB_id=367256 FDP16_RS11715 WP_176799747.1 2341591..2342352(+) (spo0J) [Streptococcus sanguinis strain CGMH058]
ATGGAAAACTTTCAATATATTGCACTTAAAGATATTCGAACCAACCCTTATCAGCCTCGTAAAGAATTTTCACAAAAAAA
GATAGAAGAATTAGCGGCATCAATCAAAGAAAATGGTCTCATTCAGCCAATCATTCTTCGGAAATCTTCACTTTTTGGTT
ATGAAATTTTAGCAGGTGAACGGAGATATAGAGCTGTCTCTTTTCTTGGCCTAGAAACGATCCCAGCTGTCGTCAAAGAA
TTATCTGATGATGACATGCTGAAACAGGCCATTATCGAAAATCTTCAAAGAGAAGACTTGAATCCTATAGAGGAGGCTGA
GTCTTATCAAAATTTGATTGACAAAGGCTTGACACATGATGAAATTGCTAAAATCATGGGAAAATCTAGACCCTATATAA
GCAATATTGTCAGACTTTTACAGCTGGCTAAAGAAGTTCGTCAAGCTATTAAGGAAGAAGAGATTTCTCAAGGACATGCT
CGCCTACTGGTCCCCTTAAAAGAAGAAGAACAGTTACTATGGCTGGAAAAGATCTGTCGAGAAGATTTATCGGTTCGAGC
AGTTGAAAAGCTTCTCCAGCAAAAAAAGAGTTTCAAAAAGAAACCTAATAAAGAACTGTTTGCTAAATCTGAAGAGGAAA
AAATTAAAAAAATTCTCGGTCTGGAAGTTTCTATTCAGTTAAAAAGCCAGAGTAAAGGAAAGCTAATTATTCCTTTTGAA
AGCGAAGAAGAATATCAAAGAATTATAAACAGTTTTAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

52.59

99.209

0.522


Multiple sequence alignment