Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   FDP16_RS02095 Genome accession   NZ_CP040798
Coordinates   413432..415402 (+) Length   656 a.a.
NCBI ID   WP_176798396.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain CGMH058     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 408432..420402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP16_RS02085 (FDP16_02170) pbp3 409723..410991 (-) 1269 WP_176798394.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  FDP16_RS02090 (FDP16_02175) amiA 411285..413240 (+) 1956 WP_176798395.1 peptide ABC transporter substrate-binding protein Regulator
  FDP16_RS02095 (FDP16_02180) amiA3 413432..415402 (+) 1971 WP_176798396.1 peptide ABC transporter substrate-binding protein Regulator
  FDP16_RS02100 (FDP16_02185) amiA3 415629..417605 (+) 1977 WP_176798397.1 peptide ABC transporter substrate-binding protein Regulator
  FDP16_RS02105 (FDP16_02190) amiC 417671..419167 (+) 1497 WP_176798398.1 ABC transporter permease Regulator
  FDP16_RS02110 (FDP16_02195) amiD 419167..420093 (+) 927 WP_176798399.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72634.15 Da        Isoelectric Point: 4.5040

>NTDB_id=367201 FDP16_RS02095 WP_176798396.1 413432..415402(+) (amiA3) [Streptococcus sanguinis strain CGMH058]
MKTSKLAAAAGLVILSAGILAACSFGGSNSSGKNYSYVYTADPDTLDYTVSNKRATNEIMANVVDGLLESDKYGNLVPSL
AEDWTVSKDGLTYTYKLREGVKWYTSDGEEYADVTAKDFVTSLKHAADSKSDGLYIVQKSIKGLDDYVNGKITDFSQVGV
KAVDDQTVEYTLNQPESFWNSKTTMGVLFPINEEFLKSKGDKFAQGTDPTSVLYNGPFILKSITSKSQISLEKNPNYWDK
EKVKIDTVKFSYYDGQDTESLVRGFSDGNYTIARLFPNSSNFASVKKQYGDNIVYTPQGSGTFVVTTNIDRQSYEHTSKT
TDAQKSSTKKALLNKDFRQALLFAFDRTAYSAQTNGEEAADKQLRNTFVPPTFVQANGKEFGSIVEEHLASYGDEWKGVK
LDDAQDGLYNPEKAKAEFAKAKEALQAEGVEFPIHLDIPVSSADTNGVKSVQSLKQSIEANLGSDNVVIDIQQMTDDELN
NITYFANSASQEDWDLNNNLGWSPDYNDPSSYLEITGSKTGENVDSYFGFDPGTDNAAAKEAGFEEYDKLLEDAASENED
INKRYEKYAAAQAWLTDSALLMPAWSSGATPSVRKVVPFSGPFAWTGNKGEYSFKYVEIQDKPITTKEYEKAREKWAKEK
EESNKKAQEELAEHIK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=367201 FDP16_RS02095 WP_176798396.1 413432..415402(+) (amiA3) [Streptococcus sanguinis strain CGMH058]
ATGAAAACATCTAAGTTAGCTGCAGCTGCTGGGCTTGTCATTCTCTCTGCAGGAATTTTGGCTGCATGTTCGTTTGGGGG
CTCCAATTCATCTGGGAAAAACTATAGCTATGTTTATACCGCAGATCCAGATACGCTGGATTACACTGTGTCCAATAAGC
GAGCAACCAATGAGATTATGGCTAATGTAGTGGATGGTTTGCTAGAAAGCGATAAGTACGGTAACTTAGTGCCTTCTCTA
GCAGAAGATTGGACTGTTTCAAAAGATGGTCTAACCTATACTTATAAGCTTCGTGAGGGAGTGAAATGGTATACTTCTGA
TGGTGAAGAATATGCAGATGTGACTGCTAAGGACTTTGTGACCAGTCTGAAGCATGCTGCAGACAGCAAGTCTGATGGTC
TCTATATCGTTCAAAAATCCATTAAAGGCTTGGATGACTATGTTAATGGGAAGATTACCGATTTCTCTCAAGTAGGTGTC
AAAGCTGTCGATGATCAGACAGTTGAGTATACCCTCAACCAGCCAGAAAGTTTCTGGAATTCTAAGACAACCATGGGTGT
TCTTTTCCCAATCAATGAGGAATTTCTGAAGTCGAAAGGTGATAAATTTGCTCAGGGAACAGATCCAACCAGTGTTCTCT
ATAATGGTCCGTTTATCCTGAAATCTATCACTTCAAAATCTCAAATTAGCTTAGAGAAAAATCCAAACTATTGGGATAAG
GAAAAGGTAAAAATTGACACTGTTAAATTCTCTTACTATGATGGTCAAGATACAGAATCTCTGGTGCGTGGTTTTTCTGA
TGGCAACTACACCATTGCTCGTCTTTTCCCAAATAGCTCCAACTTTGCCAGTGTGAAGAAACAGTATGGCGATAATATCG
TCTACACTCCTCAAGGTTCAGGGACCTTCGTTGTCACAACTAATATCGACCGTCAGTCTTACGAGCATACTTCTAAGACA
ACGGATGCACAAAAATCTTCCACTAAGAAAGCACTGCTCAATAAAGATTTCCGTCAGGCTTTGCTTTTTGCCTTTGACCG
TACTGCCTATTCTGCACAAACCAATGGCGAAGAAGCAGCAGACAAGCAGCTTCGTAATACCTTTGTTCCGCCAACCTTTG
TTCAAGCTAATGGTAAAGAGTTCGGCAGCATTGTAGAAGAACATCTGGCTAGCTACGGTGATGAGTGGAAGGGAGTCAAA
TTAGACGACGCTCAAGATGGTCTTTATAATCCAGAAAAAGCTAAGGCAGAATTTGCCAAAGCTAAGGAAGCACTGCAGGC
AGAAGGAGTAGAATTCCCTATTCATCTGGATATTCCGGTTAGCTCAGCAGATACCAATGGTGTTAAGAGTGTTCAGTCAC
TGAAGCAGTCTATTGAAGCTAATCTTGGCTCTGACAATGTGGTGATTGATATTCAGCAGATGACAGATGATGAGTTGAAT
AACATCACCTACTTTGCGAACTCTGCATCTCAAGAAGACTGGGACTTGAATAATAATCTCGGTTGGAGCCCAGATTATAA
CGATCCATCTTCTTATCTGGAAATCACTGGCTCTAAGACTGGTGAGAATGTTGATAGCTACTTTGGTTTTGACCCTGGAA
CAGATAATGCAGCAGCTAAAGAGGCCGGCTTTGAAGAGTATGACAAGCTCTTGGAAGACGCTGCTTCAGAAAACGAGGAC
ATTAACAAACGTTACGAAAAGTATGCTGCAGCTCAGGCTTGGCTGACAGACAGTGCCCTGTTGATGCCGGCATGGTCATC
TGGTGCAACACCAAGTGTCCGTAAGGTTGTTCCATTCTCAGGTCCATTTGCTTGGACTGGAAACAAGGGTGAATACAGCT
TTAAATATGTTGAAATCCAAGATAAACCAATAACGACTAAAGAATATGAAAAAGCGCGTGAAAAATGGGCAAAAGAAAAG
GAAGAATCCAACAAGAAAGCTCAAGAAGAACTCGCAGAACATATCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.636

100

0.599
  amiA3 Streptococcus thermophilus LMG 18311

58.877

100

0.591
  amiA Streptococcus salivarius strain HSISS4

58.663

100

0.588

Multiple sequence alignment