Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   FDP16_RS02090 Genome accession   NZ_CP040798
Coordinates   411285..413240 (+) Length   651 a.a.
NCBI ID   WP_176798395.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain CGMH058     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 406285..418240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP16_RS02070 (FDP16_02155) - 406378..407610 (+) 1233 WP_176798392.1 cysteine desulfurase -
  FDP16_RS02075 (FDP16_02160) sufU 407597..408034 (+) 438 WP_061412721.1 Fe-S cluster assembly sulfur transfer protein SufU -
  FDP16_RS02080 (FDP16_02165) sufB 408052..409464 (+) 1413 WP_176798393.1 Fe-S cluster assembly protein SufB -
  FDP16_RS02085 (FDP16_02170) pbp3 409723..410991 (-) 1269 WP_176798394.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  FDP16_RS02090 (FDP16_02175) amiA 411285..413240 (+) 1956 WP_176798395.1 peptide ABC transporter substrate-binding protein Regulator
  FDP16_RS02095 (FDP16_02180) amiA3 413432..415402 (+) 1971 WP_176798396.1 peptide ABC transporter substrate-binding protein Regulator
  FDP16_RS02100 (FDP16_02185) amiA3 415629..417605 (+) 1977 WP_176798397.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 651 a.a.        Molecular weight: 72511.14 Da        Isoelectric Point: 4.5176

>NTDB_id=367200 FDP16_RS02090 WP_176798395.1 411285..413240(+) (amiA) [Streptococcus sanguinis strain CGMH058]
MKKSKWLAVTGLTAISALILAACGNSSASNTYSYVYSSDPDTLDYVNSNRSTTSDVIANLVDGLLENDEYGNLVPSIAED
WTVSKDGLTYTYKLRKDAKWYTSDGEEYAEVKAQDFVAGLKHAADENSEALPIVQNSIKGLDAYVKGESKDFSTVGVKAV
DDHTVEYTLNQPESYWNSKTTMGILFPINEDFLKSQGKDFGTVKPSSILYNGPYVLKAFTSKSVIEYAKNQNYWDKDNVK
IDNVKLTYYDGSDQESLIRNFSDGAYSQARLYPTSSNYASIEKQYKDYIIYTPQNSTSYFFSFNLNRKAYNHSSKTTDAQ
KTSTTAAIQNKDFRQAINFAFNRTSFGAQMNGEEGATKLIRSLLVPPSFVQVDGKDFSDVVESQLASYGDEWNGVKLTDA
QDSIYNADKAKVEFAKAKETLQAEGVEFPIHIDVPVDQTDKVLVQRTNSFKQSVEAALGQENVVIDVQQMSTDDFDNSAY
FAETAAQKDYDLNMSGWSADYQDPSTYLNIFNPETGDATDNIGIEKGKNADVANKVGLNEYKELLDEADKEKQDTDARYT
KYAAAQAWLTDSSIVIPSVSAGGSPVVQKVVPFTKSYSYVGIKGDVYVFKNMELQNDIVTAKDYEAALKKWEKEKEASNK
KAQEELEKHIK

Nucleotide


Download         Length: 1956 bp        

>NTDB_id=367200 FDP16_RS02090 WP_176798395.1 411285..413240(+) (amiA) [Streptococcus sanguinis strain CGMH058]
ATGAAAAAATCTAAATGGTTGGCCGTTACTGGTCTGACGGCTATTTCGGCGCTAATCTTAGCTGCTTGTGGAAATTCCAG
TGCAAGCAATACCTACTCTTATGTCTATTCGAGTGATCCTGATACTTTGGACTATGTCAATTCAAATCGATCTACCACTT
CCGATGTTATTGCAAACTTGGTGGACGGCCTTTTAGAAAATGATGAATACGGCAATCTGGTTCCATCTATTGCAGAAGAC
TGGACTGTTTCAAAGGATGGTCTGACTTATACTTACAAGCTTCGTAAAGATGCTAAGTGGTACACATCAGATGGTGAAGA
ATATGCAGAGGTTAAAGCACAAGACTTTGTAGCAGGTTTGAAGCACGCGGCAGATGAAAATTCTGAAGCTCTTCCTATCG
TCCAAAATTCCATTAAAGGCTTGGATGCCTATGTCAAAGGAGAGTCTAAAGACTTCTCAACAGTTGGAGTAAAAGCAGTT
GATGACCATACGGTCGAATACACGCTCAACCAGCCAGAAAGCTACTGGAACTCTAAGACAACCATGGGGATTCTCTTTCC
AATCAATGAGGATTTCTTGAAGTCACAAGGCAAAGATTTTGGTACCGTAAAACCTTCTTCCATTCTTTATAATGGACCTT
ATGTTCTGAAAGCATTCACTTCTAAGTCTGTCATTGAATATGCTAAAAACCAAAACTACTGGGATAAGGACAATGTCAAG
ATTGACAATGTGAAGTTGACCTATTATGATGGTTCAGACCAAGAATCACTAATCCGCAACTTCTCAGACGGCGCCTATTC
TCAAGCACGGCTTTATCCTACGAGCTCTAACTATGCTTCTATAGAAAAGCAATACAAAGATTATATTATCTACACACCAC
AGAACTCAACCAGCTATTTCTTTAGCTTCAATCTGAATCGTAAGGCTTATAATCATTCGTCTAAGACCACAGATGCTCAG
AAGACATCGACTACAGCCGCTATCCAGAACAAAGACTTCCGTCAGGCGATTAACTTTGCCTTTAACAGGACATCTTTTGG
AGCTCAGATGAATGGTGAAGAAGGGGCGACGAAGCTCATCCGTAGCTTGCTTGTTCCTCCTAGCTTTGTGCAGGTGGACG
GTAAGGACTTCTCTGATGTAGTAGAGAGTCAACTCGCATCTTATGGAGATGAGTGGAATGGGGTTAAGCTGACAGATGCC
CAAGACAGCATCTACAATGCTGACAAGGCTAAGGTAGAGTTTGCTAAGGCTAAAGAGACCTTACAAGCAGAAGGTGTAGA
ATTCCCAATCCATATTGATGTTCCTGTGGATCAGACTGACAAAGTCTTAGTACAGCGGACCAACTCTTTCAAACAGTCTG
TCGAAGCAGCGCTTGGTCAAGAAAATGTTGTCATCGATGTTCAGCAAATGTCAACAGATGACTTTGATAACTCTGCCTAC
TTTGCAGAAACAGCAGCTCAGAAAGACTACGACCTCAACATGTCTGGCTGGTCAGCAGACTACCAAGATCCATCAACTTA
TCTGAATATTTTCAATCCAGAAACAGGTGATGCTACAGATAATATTGGTATAGAAAAAGGCAAAAATGCGGATGTTGCAA
ATAAAGTCGGCTTGAACGAATACAAAGAGTTATTGGATGAGGCAGATAAGGAAAAACAAGATACCGACGCTCGTTATACC
AAATACGCAGCAGCTCAAGCTTGGTTGACAGATAGCTCCATTGTTATTCCTAGTGTTTCTGCAGGTGGTTCACCAGTTGT
TCAGAAGGTTGTGCCATTTACCAAGTCTTACTCTTATGTCGGAATCAAAGGAGATGTCTATGTCTTTAAGAACATGGAGC
TCCAAAATGATATTGTGACAGCTAAAGACTATGAAGCGGCTCTTAAGAAATGGGAAAAAGAAAAGGAAGCATCCAATAAA
AAAGCCCAAGAAGAGCTAGAAAAACACATCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(73-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.773

100

0.573
  amiA3 Streptococcus thermophilus LMD-9

55.083

100

0.558
  amiA3 Streptococcus thermophilus LMG 18311

54.78

100

0.555

Multiple sequence alignment