Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   FDP16_RS02110 Genome accession   NZ_CP040798
Coordinates   419167..420093 (+) Length   308 a.a.
NCBI ID   WP_176798399.1    Uniprot ID   A0A7H8V541
Organism   Streptococcus sanguinis strain CGMH058     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 414167..425093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP16_RS02100 (FDP16_02185) amiA3 415629..417605 (+) 1977 WP_176798397.1 peptide ABC transporter substrate-binding protein Regulator
  FDP16_RS02105 (FDP16_02190) amiC 417671..419167 (+) 1497 WP_176798398.1 ABC transporter permease Regulator
  FDP16_RS02110 (FDP16_02195) amiD 419167..420093 (+) 927 WP_176798399.1 oligopeptide ABC transporter permease OppC Regulator
  FDP16_RS02115 (FDP16_02200) amiE 420102..421169 (+) 1068 WP_176798400.1 ABC transporter ATP-binding protein Regulator
  FDP16_RS02120 (FDP16_02205) amiF 421180..422094 (+) 915 WP_176798401.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34698.74 Da        Isoelectric Point: 9.7485

>NTDB_id=367204 FDP16_RS02110 WP_176798399.1 419167..420093(+) (amiD) [Streptococcus sanguinis strain CGMH058]
MATIDKSKFQFVKRDDFASETIDAPAYSYWRSVMRQFLKKKSTIVMLGILIAIVLMSFIYPMFSDFDFNDVSKVNDFSMR
YIKPNAQYWFGTDSNGKSLFDGVWFGARNSILISIIATVINLAIGVIIGGIWGISKTVDRFMMEVYNIISNIPALLIVIV
LTYSIGAGFWNLIFAMTITGWVGIAYTIRVQIMRYRDLEYNLASRTLGTPTLKIVTKNIMPQLVSVIVTTTSQMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLTFFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=367204 FDP16_RS02110 WP_176798399.1 419167..420093(+) (amiD) [Streptococcus sanguinis strain CGMH058]
ATGGCTACAATTGATAAAAGTAAATTCCAATTTGTCAAACGTGACGATTTTGCCTCTGAAACGATTGATGCACCGGCTTA
TTCATATTGGCGCTCAGTTATGCGTCAATTCCTTAAGAAGAAATCAACGATTGTGATGCTAGGCATTCTGATAGCCATTG
TTCTCATGAGTTTCATTTATCCTATGTTTTCAGACTTCGACTTTAATGATGTGAGTAAGGTAAATGACTTTAGCATGCGT
TATATCAAGCCAAATGCTCAATACTGGTTTGGGACAGATAGTAATGGTAAGTCTCTCTTTGATGGTGTTTGGTTTGGTGC
TCGTAACTCTATTCTTATTTCGATTATTGCGACAGTTATTAATCTGGCTATCGGAGTTATCATCGGCGGTATCTGGGGAA
TTTCCAAAACAGTTGACCGCTTCATGATGGAAGTCTACAATATCATTTCAAATATCCCAGCCCTCTTGATTGTCATCGTC
TTGACTTACTCTATCGGTGCTGGTTTCTGGAATCTGATTTTTGCCATGACGATTACTGGTTGGGTCGGTATTGCTTACAC
TATCCGTGTGCAGATTATGCGCTATCGGGATTTGGAGTACAACCTTGCCTCTCGTACCCTTGGTACACCGACTCTCAAGA
TTGTAACGAAGAACATTATGCCGCAGTTGGTATCTGTTATCGTGACCACCACTTCACAGATGCTACCAAGCTTTATCTCT
TACGAAGCCTTTCTGTCCTTCTTTGGCCTAGGGCTTCCTGTAACAGTTCCAAGTTTGGGACGCTTGATCTCAGATTATTC
TCAAAACGTGACGACCAATGCCTACCTCTTTTGGATTCCACTTACAACTCTGATTTTGGTATCCTTAACCTTCTTCGTAG
TTGGTCAAAACTTAGCCGACGCCAGCGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8V541

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

86.039

100

0.86
  amiD Streptococcus thermophilus LMG 18311

84.091

100

0.841
  amiD Streptococcus thermophilus LMD-9

84.091

100

0.841

Multiple sequence alignment