Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   FDP16_RS02115 Genome accession   NZ_CP040798
Coordinates   420102..421169 (+) Length   355 a.a.
NCBI ID   WP_176798400.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain CGMH058     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 415102..426169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP16_RS02100 (FDP16_02185) amiA3 415629..417605 (+) 1977 WP_176798397.1 peptide ABC transporter substrate-binding protein Regulator
  FDP16_RS02105 (FDP16_02190) amiC 417671..419167 (+) 1497 WP_176798398.1 ABC transporter permease Regulator
  FDP16_RS02110 (FDP16_02195) amiD 419167..420093 (+) 927 WP_176798399.1 oligopeptide ABC transporter permease OppC Regulator
  FDP16_RS02115 (FDP16_02200) amiE 420102..421169 (+) 1068 WP_176798400.1 ABC transporter ATP-binding protein Regulator
  FDP16_RS02120 (FDP16_02205) amiF 421180..422094 (+) 915 WP_176798401.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39465.18 Da        Isoelectric Point: 4.8745

>NTDB_id=367205 FDP16_RS02115 WP_176798400.1 420102..421169(+) (amiE) [Streptococcus sanguinis strain CGMH058]
MTKNENVILTARDIVVEFDVRDRVLTAIRGVSLDLIEGEVLAIVGESGSGKSVLTKTFTGMLEENGRVAQGTIDYRGKDL
TTLRSNKDWEPIRGAKIATIFQDPMTSLDPINTIGSQITEVIIKHQGKSAKEAKKMAIDYMSKVGIPDAEKRFEEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKSLQQEYHFTTIFITHDLGVVASIADKVAVMYAGEIIE
YGTVEEIFYEPKHPYTWSLLSSLPQLADANGALYSIPGTPPSLYSPIKGDAFALRSDYAMSIDFEEAAPAFNVSETHWAK
TWLLHEDAPKVHKPEIIENLHEKIRSKMGFNQLEA

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=367205 FDP16_RS02115 WP_176798400.1 420102..421169(+) (amiE) [Streptococcus sanguinis strain CGMH058]
ATGACAAAGAATGAAAATGTAATATTGACTGCTCGCGATATTGTCGTGGAATTCGATGTTCGCGATCGTGTCTTAACCGC
CATTCGCGGTGTCTCTCTGGACTTGATTGAGGGCGAAGTGCTGGCTATTGTTGGTGAATCTGGTTCAGGTAAGTCTGTCT
TAACCAAGACTTTTACCGGTATGTTAGAAGAAAATGGCCGTGTAGCTCAGGGAACTATTGACTATCGTGGCAAAGATTTG
ACAACTCTTCGGAGTAACAAGGATTGGGAGCCAATTCGCGGTGCAAAAATTGCGACTATCTTCCAAGATCCGATGACGAG
CTTGGATCCTATTAATACTATTGGAAGCCAGATTACAGAAGTCATTATCAAGCACCAAGGAAAATCAGCCAAAGAAGCTA
AAAAAATGGCCATTGATTATATGAGCAAGGTCGGAATTCCAGATGCGGAAAAACGTTTCGAAGAATATCCTTTCCAATAC
TCAGGTGGGATGCGGCAGCGGATTGTTATTGCGATTGCTTTGGCTTGCCGTCCTGATATTCTTATCTGTGATGAGCCGAC
AACGGCTCTTGACGTAACTATTCAAGCACAGATTATTGACTTGCTCAAATCGCTGCAGCAAGAATATCATTTCACAACCA
TCTTTATTACGCACGACCTTGGTGTTGTAGCTAGTATTGCAGATAAGGTTGCAGTCATGTATGCTGGTGAGATTATCGAA
TACGGTACAGTTGAAGAAATCTTCTACGAGCCAAAACATCCTTATACATGGAGTTTGCTGTCCAGCTTGCCACAGTTAGC
AGATGCAAATGGTGCGCTTTACTCGATTCCTGGAACGCCACCGTCTCTTTATTCACCAATCAAAGGGGATGCCTTTGCTT
TGCGCTCTGACTATGCTATGTCAATTGACTTTGAAGAAGCAGCGCCGGCTTTCAATGTGTCTGAAACTCATTGGGCTAAG
ACCTGGTTGCTCCACGAAGATGCGCCTAAGGTTCATAAACCAGAGATTATCGAAAACCTGCATGAAAAAATTCGTTCAAA
AATGGGCTTCAATCAATTAGAAGCTTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

86.686

99.437

0.862
  amiE Streptococcus thermophilus LMG 18311

85.836

99.437

0.854
  amiE Streptococcus thermophilus LMD-9

85.836

99.437

0.854
  oppD Streptococcus mutans UA159

56.14

96.338

0.541

Multiple sequence alignment