Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   FED49_RS16320 Genome accession   NZ_CP040747
Coordinates   3114253..3114849 (-) Length   198 a.a.
NCBI ID   WP_007500118.1    Uniprot ID   -
Organism   Bacillus altitudinis strain HQ-51-Ba     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3115301..3154633 3114253..3114849 flank 452


Gene organization within MGE regions


Location: 3114253..3154633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED49_RS16320 clpP 3114253..3114849 (-) 597 WP_007500118.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  FED49_RS16330 - 3115301..3116437 (-) 1137 WP_138826494.1 site-specific integrase -
  FED49_RS16335 - 3116660..3117748 (+) 1089 WP_138826496.1 AimR family lysis-lysogeny pheromone receptor -
  FED49_RS19540 - 3117764..3117892 (+) 129 WP_263630206.1 hypothetical protein -
  FED49_RS16340 - 3118174..3118566 (-) 393 WP_075611962.1 helix-turn-helix domain-containing protein -
  FED49_RS16345 - 3118730..3118936 (+) 207 WP_087977342.1 helix-turn-helix domain-containing protein -
  FED49_RS16350 - 3118972..3119295 (+) 324 WP_175415468.1 DUF771 domain-containing protein -
  FED49_RS16360 - 3119879..3120286 (+) 408 WP_138826503.1 hypothetical protein -
  FED49_RS16365 - 3120357..3121409 (+) 1053 WP_138826505.1 replication initiation factor domain-containing protein -
  FED49_RS16370 - 3121720..3124803 (-) 3084 WP_235671410.1 lamin tail domain-containing protein -
  FED49_RS16375 - 3124898..3125284 (-) 387 WP_007500042.1 phage holin family protein -
  FED49_RS16380 - 3125285..3125479 (-) 195 WP_008348183.1 PspC domain-containing protein -
  FED49_RS16385 - 3125486..3126577 (-) 1092 WP_060832685.1 DUF4097 family beta strand repeat-containing protein -
  FED49_RS16390 - 3126589..3126924 (-) 336 WP_008348186.1 hypothetical protein -
  FED49_RS16395 - 3127122..3127352 (+) 231 WP_008348188.1 hypothetical protein -
  FED49_RS16400 uvrA 3127386..3130262 (-) 2877 WP_048001943.1 excinuclease ABC subunit UvrA -
  FED49_RS16405 uvrB 3130270..3132255 (-) 1986 WP_035389639.1 excinuclease ABC subunit UvrB -
  FED49_RS16410 - 3132546..3132791 (-) 246 WP_008348197.1 CsbA family protein -
  FED49_RS16415 - 3133076..3135601 (+) 2526 WP_138826507.1 PEP/pyruvate-binding domain-containing protein -
  FED49_RS16420 - 3135692..3136264 (+) 573 WP_008348201.1 TetR/AcrR family transcriptional regulator -
  FED49_RS16425 - 3136305..3137639 (+) 1335 WP_138826509.1 MFS transporter -
  FED49_RS16430 - 3137908..3138891 (+) 984 WP_138826511.1 YncE family protein -
  FED49_RS16435 - 3138888..3139574 (+) 687 WP_138826513.1 response regulator transcription factor -
  FED49_RS16440 - 3139571..3140989 (+) 1419 WP_138826515.1 ATP-binding protein -
  FED49_RS16445 - 3141138..3143261 (+) 2124 WP_138826517.1 ArnT family glycosyltransferase -
  FED49_RS16450 - 3143293..3144285 (+) 993 WP_138826519.1 glycosyltransferase family 2 protein -
  FED49_RS16455 - 3144334..3145683 (-) 1350 WP_008348215.1 amino acid permease -
  FED49_RS16460 - 3146075..3146749 (-) 675 WP_045033987.1 NAD(P)H-dependent oxidoreductase -
  FED49_RS16465 - 3146970..3147335 (+) 366 WP_017357877.1 winged helix-turn-helix transcriptional regulator -
  FED49_RS16470 - 3147345..3148532 (-) 1188 WP_235671411.1 PDZ domain-containing protein -
  FED49_RS16475 - 3148601..3148954 (-) 354 WP_007500014.1 swarming motility protein SwrAA -
  FED49_RS16480 - 3149299..3150744 (-) 1446 WP_138826521.1 S41 family peptidase -
  FED49_RS16485 - 3150898..3151638 (+) 741 WP_017368130.1 sulfite exporter TauE/SafE family protein -
  FED49_RS16490 - 3151687..3152949 (-) 1263 WP_008348225.1 murein hydrolase activator EnvC family protein -
  FED49_RS16495 ftsX 3153064..3153954 (-) 891 WP_024719915.1 permease-like cell division protein FtsX -
  FED49_RS16500 ftsE 3153947..3154633 (-) 687 WP_008348229.1 cell division ATP-binding protein FtsE -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21846.03 Da        Isoelectric Point: 4.6905

>NTDB_id=366967 FED49_RS16320 WP_007500118.1 3114253..3114849(-) (clpP) [Bacillus altitudinis strain HQ-51-Ba]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQ
PIEVIERDTDRDNFKTAEEALQYGLIDKVLTRNTEEQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=366967 FED49_RS16320 WP_007500118.1 3114253..3114849(-) (clpP) [Bacillus altitudinis strain HQ-51-Ba]
ATGAATTTAATACCTACAGTCATTGAGCAAACAAATCGTGGGGAAAGAGCTTACGACATTTATTCTCGTCTTTTAAAAGA
CCGTATTATCATGCTTGGTTCTGCGATCGATGACAATGTTGCCAACTCCATCGTATCACAGCTTCTCTTCTTAGAAGCCG
AGGATCCAGAAAAAGATATCTCTATCTACATTAACAGCCCTGGCGGTTCGATCACAGCTGGTATGGCCATTTACGATACG
ATGCAATTTATTAAACCAAAGGTATCAACTATTTGTATTGGTATGGCTGCATCTATGGGTGCGTTCCTGCTTGCTGCTGG
TGAAAAAGGTAAGCGTTATGCCCTTCCAAATAGTGAAGTGATGATTCACCAACCACTAGGTGGTGCGCAAGGTCAAGCAA
CAGAAATTGAAATTGCGGCAAAACGAATCCTTTCTTTACGCGATAAACTGAACCAAGTACTTGCTGAACGTACTGGTCAG
CCAATTGAAGTCATTGAGCGCGATACAGATCGTGACAACTTTAAAACAGCGGAAGAAGCACTTCAATACGGACTCATTGA
CAAAGTCTTGACCCGTAATACAGAAGAACAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

93.434

100

0.934
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.539

96.465

0.652
  clpP Streptococcus thermophilus LMG 18311

58.549

97.475

0.571
  clpP Streptococcus thermophilus LMD-9

58.549

97.475

0.571
  clpP Lactococcus lactis subsp. cremoris KW2

56.186

97.98

0.551
  clpP Streptococcus pneumoniae Rx1

55.67

97.98

0.545
  clpP Streptococcus pneumoniae D39

55.67

97.98

0.545
  clpP Streptococcus pneumoniae R6

55.67

97.98

0.545
  clpP Streptococcus pneumoniae TIGR4

55.67

97.98

0.545
  clpP Streptococcus pyogenes JRS4

55.44

97.475

0.54
  clpP Streptococcus pyogenes MGAS315

55.44

97.475

0.54
  clpP Streptococcus mutans UA159

54.639

97.98

0.535
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

54.124

97.98

0.53

Multiple sequence alignment