Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   GSS20_RS04440 Genome accession   NZ_CP047995
Coordinates   943048..943674 (+) Length   208 a.a.
NCBI ID   WP_005460620.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20150710009     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 938048..948674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSS20_RS04425 (GSS20_04730) - 939310..941112 (-) 1803 WP_140391324.1 ATP-binding protein -
  GSS20_RS04430 - 941159..941344 (+) 186 WP_020904052.1 hypothetical protein -
  GSS20_RS04435 (GSS20_04735) tig 941638..942942 (+) 1305 WP_140282491.1 trigger factor -
  GSS20_RS04440 (GSS20_04740) clpP 943048..943674 (+) 627 WP_005460620.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  GSS20_RS04445 (GSS20_04745) clpX 943746..945026 (+) 1281 WP_005460618.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  GSS20_RS04450 (GSS20_04750) lon 945158..947509 (+) 2352 WP_005493728.1 endopeptidase La -
  GSS20_RS04455 (GSS20_04755) - 947702..947974 (+) 273 WP_005382341.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 22927.23 Da        Isoelectric Point: 4.8520

>NTDB_id=366908 GSS20_RS04440 WP_005460620.1 943048..943674(+) (clpP) [Vibrio parahaemolyticus strain 20150710009]
MSYQEKNAMSPIMDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSP
GGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAAGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIK
QKLNNLLAEHTGQPLEVIERDTDRDNFMSAEQAVEYGIVDAVLSHRGA

Nucleotide


Download         Length: 627 bp        

>NTDB_id=366908 GSS20_RS04440 WP_005460620.1 943048..943674(+) (clpP) [Vibrio parahaemolyticus strain 20150710009]
ATGAGCTACCAAGAAAAAAATGCAATGTCGCCAATTATGGACGCACTAGTACCAATGGTGGTTGAACAAACTTCCCGAGG
CGAGCGTTCTTACGACATCTACTCACGTCTACTTAAAGAGCGCGTGATTTTTTTAACTGGTCAAGTGGAAGACCACATGG
CAAACCTTGTCGTGGCTCAGCTACTTTTCCTAGAATCTGAAAATCCAGATAAAGACATTTTCCTATACATCAACTCTCCA
GGTGGCAGCGTAACTGCAGGTATGTCAATTTACGACACAATGCAGTTTATTAAACCAAATGTAAGCACTGTATGTATGGG
CCAAGCTTGTTCTATGGGCGCATTCCTGCTTGCAGGTGGTGCAGCTGGTAAACGTTACGTTCTTCCTAACTCACGTGTGA
TGATCCACCAACCACTAGGTGGTTTCCAGGGTCAAGCTTCTGATATCCAAATCCATGCTCAGGAAATCCTGACCATTAAA
CAGAAGCTAAACAACCTGTTAGCAGAACATACTGGCCAGCCTCTTGAAGTGATTGAACGCGATACCGATCGTGACAACTT
CATGTCAGCAGAGCAGGCTGTGGAATACGGTATCGTGGATGCAGTGTTGAGCCATCGCGGCGCGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(26-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

69.474

91.346

0.635
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.83

90.385

0.577
  clpP Streptococcus pneumoniae R6

53.646

92.308

0.495
  clpP Streptococcus pneumoniae TIGR4

53.646

92.308

0.495
  clpP Streptococcus pneumoniae D39

53.646

92.308

0.495
  clpP Streptococcus pneumoniae Rx1

53.646

92.308

0.495
  clpP Lactococcus lactis subsp. cremoris KW2

51.795

93.75

0.486
  clpP Streptococcus thermophilus LMG 18311

52.083

92.308

0.481
  clpP Streptococcus thermophilus LMD-9

52.083

92.308

0.481
  clpP Streptococcus mutans UA159

51.295

92.788

0.476
  clpP Streptococcus pyogenes JRS4

51.562

92.308

0.476
  clpP Streptococcus pyogenes MGAS315

51.562

92.308

0.476
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.256

93.75

0.471