Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   FFX45_RS06850 Genome accession   NZ_CP040671
Coordinates   1360156..1361853 (+) Length   565 a.a.
NCBI ID   WP_149819386.1    Uniprot ID   -
Organism   Thermosynechococcus sp. CL-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1355156..1366853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFX45_RS06825 (FFX45_06825) - 1355537..1356238 (-) 702 WP_149819375.1 PilN domain-containing protein -
  FFX45_RS06830 (FFX45_06830) pilM 1356250..1357329 (-) 1080 WP_226971900.1 type IV pilus biogenesis protein PilM Machinery gene
  FFX45_RS06835 (FFX45_06835) - 1357592..1358173 (-) 582 WP_149819379.1 L,D-transpeptidase -
  FFX45_RS06840 (FFX45_06840) - 1358203..1358634 (-) 432 WP_149819381.1 hypothetical protein -
  FFX45_RS06845 (FFX45_06845) - 1358804..1360033 (-) 1230 WP_149819384.1 acetate/propionate family kinase -
  FFX45_RS06850 (FFX45_06850) comA 1360156..1361853 (+) 1698 WP_149819386.1 phospholipase D-like domain-containing protein Machinery gene
  FFX45_RS06855 (FFX45_06855) - 1361872..1362384 (-) 513 WP_149819388.1 adenine phosphoribosyltransferase -
  FFX45_RS06860 (FFX45_06860) - 1362434..1363738 (-) 1305 WP_226971901.1 NCS2 family permease -
  FFX45_RS06865 (FFX45_06865) - 1364141..1365859 (+) 1719 WP_149819392.1 hypothetical protein -
  FFX45_RS06870 (FFX45_06870) - 1365878..1366669 (+) 792 WP_190278008.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63097.68 Da        Isoelectric Point: 8.0435

>NTDB_id=366322 FFX45_RS06850 WP_149819386.1 1360156..1361853(+) (comA) [Thermosynechococcus sp. CL-1]
MFWQKLKWRRHGVYLLLFLLGLLIAAVVLTQLRSHPILRPALDPLPQHPQIAVHMNHSQAHSYQEPYRPYTREGEDLEAI
MIEQIAKAQKTIDVAVQEFRLPNLAKALVARQQAGVRVRVAMENTYTAPWATYSAGQVSAMDPRMRERYNDWKALVDTNG
DGQLSAAELSDRDVQTILNEAKIPWIDDTADGSKGSMLMHHKFIVIDNRQVIATTANFTLSDVHGDLGRPDTRGNANSLL
VIDSPAVARLFTEEFNIMWGDGPGGQPNSRFGVKKPVRPPQPVAVGDAMVTVRFSPTPRSQPWSVSTNGLIGQTLRWARQ
KIDMALFVFSDQELSYVLEERHNQGVSIRALIDSGFIYRDFSEALDMMGVAMANTAQARQGNCYYEAGNRPWQNPIQTVG
TPLLPEGDKLHHKYGVVDDRTVIVGSHNWSEAANRGNDEFLLVIEHPTVAAHYEREFERLYSNSRLGLPQHIRDRIQQQL
TACGGKIATRPAPSSGNRASTPTTRVNLNTATAEELQTLPGVGPKLAAEIIRAREQKPFQSLADLDAVPGVGPKLLERLR
DRVTW

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=366322 FFX45_RS06850 WP_149819386.1 1360156..1361853(+) (comA) [Thermosynechococcus sp. CL-1]
GTGTTTTGGCAAAAGCTTAAATGGCGGCGACACGGTGTGTATCTGCTGTTGTTTCTATTGGGGCTGTTGATTGCGGCTGT
GGTGCTCACTCAATTGCGATCGCACCCGATTCTCCGCCCTGCCCTAGACCCGCTGCCTCAACATCCACAAATCGCGGTAC
ACATGAATCACTCCCAAGCCCACAGTTATCAAGAACCCTATCGCCCCTATACCCGTGAAGGGGAAGACCTTGAGGCAATC
ATGATTGAGCAGATTGCCAAGGCACAAAAGACGATTGATGTGGCGGTGCAGGAGTTTCGCTTACCCAATCTGGCCAAGGC
CCTAGTAGCACGGCAGCAGGCGGGGGTGCGGGTACGAGTGGCGATGGAAAATACCTACACTGCGCCTTGGGCAACATACA
GTGCTGGGCAGGTGAGTGCCATGGATCCAAGAATGCGGGAGCGCTATAACGACTGGAAAGCGCTGGTGGATACCAACGGC
GATGGCCAACTCAGTGCTGCCGAACTCAGCGATCGCGATGTGCAGACGATTCTCAACGAAGCGAAGATTCCTTGGATTGA
TGACACTGCCGATGGCTCCAAAGGCAGTATGCTCATGCACCACAAGTTTATTGTGATTGACAATCGCCAAGTGATTGCGA
CTACGGCGAACTTTACCCTCAGTGATGTCCACGGCGACTTGGGACGACCCGATACCCGTGGCAATGCCAACTCCCTCTTG
GTGATTGATAGTCCCGCCGTGGCACGCCTATTTACTGAGGAATTCAACATCATGTGGGGGGATGGTCCCGGTGGTCAGCC
CAACAGTCGCTTTGGGGTCAAAAAGCCAGTGCGTCCCCCTCAACCAGTAGCGGTGGGCGATGCCATGGTTACGGTGCGCT
TTTCGCCAACCCCGCGATCGCAACCTTGGTCTGTCTCCACCAATGGCTTGATTGGCCAAACACTACGTTGGGCACGCCAA
AAAATTGACATGGCGCTTTTTGTCTTTTCAGATCAAGAACTATCCTACGTTTTAGAGGAACGCCATAACCAAGGGGTTAG
CATTCGCGCCCTCATTGACTCAGGATTTATCTACCGTGACTTTAGCGAAGCCCTCGATATGATGGGGGTGGCGATGGCCA
ATACTGCCCAAGCCCGTCAAGGCAACTGTTACTACGAAGCCGGCAACCGCCCGTGGCAAAACCCCATTCAAACGGTGGGC
ACCCCCCTCCTACCAGAGGGCGATAAGCTGCACCACAAGTATGGCGTGGTCGACGATCGCACCGTCATTGTTGGTTCCCA
CAACTGGTCCGAGGCGGCCAACCGCGGCAATGATGAATTCTTGCTGGTCATCGAGCATCCTACGGTTGCAGCTCACTACG
AACGGGAGTTTGAGCGGCTCTATAGCAATAGTCGTTTGGGTCTGCCGCAGCATATTCGCGATCGCATTCAGCAGCAGTTG
ACCGCCTGTGGCGGTAAGATTGCCACCCGACCTGCCCCCTCTTCAGGAAATCGTGCCAGCACACCGACTACACGGGTGAA
CTTGAACACGGCCACCGCAGAGGAACTGCAAACCCTACCGGGCGTCGGCCCAAAACTAGCGGCTGAAATTATCCGTGCCC
GCGAGCAAAAGCCCTTTCAATCCTTGGCCGATCTAGATGCCGTCCCCGGTGTCGGGCCGAAGCTCCTCGAACGCTTGCGC
GATCGCGTGACGTGGTAA

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(81-259)

PLD-like domain (PLDc_2)

(313-460)

Helix-hairpin-helix motif (HHH_3)

(504-564)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

49.117

100

0.492

Multiple sequence alignment