Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   E3S83_RS03730 Genome accession   NZ_CP047843
Coordinates   783789..784376 (+) Length   195 a.a.
NCBI ID   WP_160175789.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_620     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 778789..789376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S83_RS03715 (E3S83_03715) rapZ 780258..781169 (+) 912 WP_000369722.1 RNase adapter RapZ -
  E3S83_RS03720 (E3S83_03720) - 781166..782161 (+) 996 WP_001248939.1 YvcK family protein -
  E3S83_RS03725 (E3S83_03725) whiA 782272..783216 (+) 945 WP_000006551.1 DNA-binding protein WhiA -
  E3S83_RS03730 (E3S83_03730) clpP 783789..784376 (+) 588 WP_160175789.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  E3S83_RS03735 (E3S83_03735) - 784619..785521 (-) 903 WP_000816304.1 TIGR01777 family oxidoreductase -
  E3S83_RS03740 (E3S83_03740) - 786224..786853 (+) 630 WP_000070826.1 DUF4887 domain-containing protein -
  E3S83_RS03745 (E3S83_03745) - 787551..788564 (+) 1014 WP_000654030.1 sugar-binding transcriptional regulator -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21499.54 Da        Isoelectric Point: 4.8892

>NTDB_id=365034 E3S83_RS03730 WP_160175789.1 783789..784376(+) (clpP) [Staphylococcus aureus strain UP_620]
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDT
IQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQ
SIEKIQKDTDRDNFLTADEAKEYGLIDEVMVPETK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=365034 E3S83_RS03730 WP_160175789.1 783789..784376(+) (clpP) [Staphylococcus aureus strain UP_620]
ATGAATTTAATTCCTACAGTTATTGAAACAACAAACCGCGGTGAACGTGCATATGATATATACTCACGTTTATTAAAAGA
CCGTATTATTATGTTAGGTTCACAAATTGATGACAACGTAGCAAATTCAATCGTATCACAGTTATTATTCTTACAAGCGC
AAGACTCAGAGAAAGATATTTATTTATACATTAATTCACCAGGTGGAAGTGTAACAGCTGGTTTTGCGATTTATGATACA
ATTCAACACATTAAACCTGATGTTCAAACAATTTGTATCGGTATGGCTGCATCAATGGGATCATTCTTATTAGCAGCTGG
TGCAAAAGGTAAACGTTTCGCGTTACCAAATGCAGAAGTAATGATTCACCAACCATTAGGTGGTGCTCAAGGACAAGCAA
CTGAAATCGAAATTGCTGCAAATCACATTTTAAAAACACGTGAAAAATTAAACCGCATTTTATCAGAGCGTACTGGTCAA
AGTATTGAAAAAATACAAAAAGACACAGATCGTGATAACTTCTTAACTGCAGATGAAGCTAAAGAATATGGCTTAATTGA
TGAAGTGATGGTACCTGAAACAAAATAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(13-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

80.526

97.436

0.785
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.085

96.41

0.656
  clpP Streptococcus pneumoniae Rx1

63.684

97.436

0.621
  clpP Streptococcus pneumoniae D39

63.684

97.436

0.621
  clpP Streptococcus pneumoniae R6

63.684

97.436

0.621
  clpP Streptococcus pneumoniae TIGR4

63.684

97.436

0.621
  clpP Streptococcus thermophilus LMG 18311

63.158

97.436

0.615
  clpP Streptococcus thermophilus LMD-9

63.158

97.436

0.615
  clpP Lactococcus lactis subsp. cremoris KW2

62.105

97.436

0.605
  clpP Streptococcus mutans UA159

61.257

97.949

0.6
  clpP Streptococcus pyogenes JRS4

60.526

97.436

0.59
  clpP Streptococcus pyogenes MGAS315

60.526

97.436

0.59
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

60

97.436

0.585

Multiple sequence alignment