Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BCPR1_RS27385 Genome accession   NZ_CP040515
Coordinates   5279315..5279599 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus paranthracis strain PR1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 5274315..5284599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCPR1_RS27370 (BCPR1_27370) rnmV 5275107..5275664 (-) 558 WP_000692830.1 ribonuclease M5 -
  BCPR1_RS27375 (BCPR1_27375) - 5275881..5276648 (-) 768 WP_138322582.1 TatD family hydrolase -
  BCPR1_RS27380 (BCPR1_27380) metG 5276815..5278797 (-) 1983 WP_138322583.1 methionine--tRNA ligase -
  BCPR1_RS27385 (BCPR1_27385) abrB 5279315..5279599 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BCPR1_RS27390 (BCPR1_27390) rsmI 5279620..5280495 (-) 876 WP_000267829.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BCPR1_RS27395 (BCPR1_27395) - 5280464..5280754 (-) 291 WP_000414340.1 GIY-YIG nuclease family protein -
  BCPR1_RS27400 (BCPR1_27400) - 5280741..5281481 (-) 741 WP_001055351.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  BCPR1_RS27405 (BCPR1_27405) yabA 5281602..5281952 (-) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  BCPR1_RS27410 (BCPR1_27410) - 5281967..5282794 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  BCPR1_RS27415 (BCPR1_27415) holB 5282800..5283783 (-) 984 WP_000169574.1 DNA polymerase III subunit delta' -
  BCPR1_RS27420 (BCPR1_27420) tmk 5283819..5284445 (-) 627 WP_000677231.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=364894 BCPR1_RS27385 WP_000843036.1 5279315..5279599(+) (abrB) [Bacillus paranthracis strain PR1]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=364894 BCPR1_RS27385 WP_000843036.1 5279315..5279599(+) (abrB) [Bacillus paranthracis strain PR1]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCGATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTACGTTGATGACGAGAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAGCTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment