Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpP   Type   Regulator
Locus tag   BCPR1_RS14075 Genome accession   NZ_CP040515
Coordinates   2691471..2692052 (+) Length   193 a.a.
NCBI ID   WP_000991625.1    Uniprot ID   A0A2A8KY00
Organism   Bacillus paranthracis strain PR1     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context


Location: 2686471..2697052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCPR1_RS14050 (BCPR1_14050) - 2687592..2688959 (+) 1368 Protein_2743 lytic polysaccharide monooxygenase -
  BCPR1_RS14055 (BCPR1_14055) - 2689090..2689524 (-) 435 WP_000555718.1 GNAT family N-acetyltransferase -
  BCPR1_RS14060 (BCPR1_14060) rpiA 2689632..2690294 (-) 663 WP_138321897.1 ribose 5-phosphate isomerase A -
  BCPR1_RS14065 (BCPR1_14065) - 2690299..2690619 (-) 321 WP_001125377.1 2Fe-2S iron-sulfur cluster-binding protein -
  BCPR1_RS14070 (BCPR1_14070) - 2690763..2691449 (+) 687 WP_138321898.1 RNA polymerase subunit sigma-70 -
  BCPR1_RS14075 (BCPR1_14075) clpP 2691471..2692052 (+) 582 WP_000991625.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  BCPR1_RS14080 (BCPR1_14080) - 2692098..2692955 (-) 858 WP_001227646.1 glycine betaine ABC transporter substrate-binding protein -
  BCPR1_RS14085 (BCPR1_14085) - 2693126..2694331 (+) 1206 WP_000370624.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  BCPR1_RS14090 (BCPR1_14090) - 2694324..2695160 (+) 837 WP_001084762.1 proline/glycine betaine ABC transporter permease -
  BCPR1_RS14095 (BCPR1_14095) - 2695457..2695624 (+) 168 WP_044792184.1 hypothetical protein -
  BCPR1_RS14100 (BCPR1_14100) - 2695725..2696216 (+) 492 WP_138322601.1 HIT family protein -
  BCPR1_RS14105 (BCPR1_14105) - 2696200..2697036 (+) 837 WP_052587761.1 PP2C family serine/threonine-protein phosphatase -

Sequence


Protein


Download         Length: 193 a.a.        Molecular weight: 21178.42 Da        Isoelectric Point: 5.0776

>NTDB_id=364872 BCPR1_RS14075 WP_000991625.1 2691471..2692052(+) (clpP) [Bacillus paranthracis strain PR1]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQ
PIERVAHDTERDYFMTAEEAKAYGIVDDVVTKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=364872 BCPR1_RS14075 WP_000991625.1 2691471..2692052(+) (clpP) [Bacillus paranthracis strain PR1]
ATGAATGCAATTCCATATGTTGTAGAACAAACGAAATTAGGAGAACGTTCCTATGATATATACTCAAGGTTATTAAAAGA
CCGTATTGTTATTATCGGTTCAGAAATAAATGATCAAGTAGCGAGTAGTGTCGTAGCTCAATTATTATTTTTAGAAGCAG
AAGATGCAGAGAAAGATATATTTTTATACATTAATAGTCCAGGCGGATCAACGACAGCAGGTTTTGCCATATTGGATACG
ATGAATTTAATTAAACCAGACGTGCAAACGCTATGCATGGGCTTTGCAGCATCATTTGGTGCATTGCTATTATTATCAGG
TGCAAAAGGAAAACGGTTTGCACTCCCAAATAGTGAAATTATGATTCATCAGCCGCTTGGTGGTGCACAAGGGCAAGCAA
CGGAAATTGAAATCACAGCAAAAAGAATTTTAAAGTTAAAACATGATATTAATAAAATGATTGCAGAAAAAACAGGGCAA
CCGATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCAGAAGAAGCAAAGGCATATGGGATTGTAGA
TGATGTTGTTACGAAAAAATAG

Domains


Predicted by InterproScan.

(14-192)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A2A8KY00

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

68.063

98.964

0.674

  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.667

97.927

0.653

  clpP Streptococcus thermophilus LMD-9

54.688

99.482

0.544

  clpP Streptococcus pneumoniae Rx1

54.688

99.482

0.544

  clpP Streptococcus thermophilus LMG 18311

54.688

99.482

0.544

  clpP Streptococcus pneumoniae D39

54.688

99.482

0.544

  clpP Streptococcus pneumoniae R6

54.688

99.482

0.544

  clpP Streptococcus pneumoniae TIGR4

54.688

99.482

0.544

  clpP Streptococcus pyogenes MGAS315

55.556

97.927

0.544

  clpP Streptococcus pyogenes JRS4

55.556

97.927

0.544

  clpP Streptococcus mutans UA159

53.439

97.927

0.523

  clpP Lactococcus lactis subsp. cremoris KW2

51.852

97.927

0.508

  clpP Lactococcus lactis subsp. lactis strain DGCC12653

49.735

97.927

0.487


Multiple sequence alignment