Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   EUC40_RS01365 Genome accession   NZ_CP040336
Coordinates   282927..283508 (-) Length   193 a.a.
NCBI ID   WP_001049155.1    Uniprot ID   A0A090YL26
Organism   Bacillus luti strain FJ     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 277927..288508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUC40_RS01340 - 278918..279376 (+) 459 WP_001190080.1 8-oxo-dGTP diphosphatase -
  EUC40_RS01345 rapZ 279397..280278 (+) 882 WP_000138463.1 RNase adapter RapZ -
  EUC40_RS01350 - 280282..281235 (+) 954 WP_071710090.1 YvcK family protein -
  EUC40_RS01355 whiA 281326..282276 (+) 951 WP_000006562.1 DNA-binding protein WhiA -
  EUC40_RS01360 - 282300..282548 (+) 249 WP_000250298.1 HPr family phosphocarrier protein -
  EUC40_RS01365 clpP 282927..283508 (-) 582 WP_001049155.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  EUC40_RS01370 - 283749..284618 (-) 870 WP_156573300.1 DUF421 domain-containing protein -
  EUC40_RS01375 - 284639..284845 (-) 207 WP_088232025.1 DUF1657 domain-containing protein -
  EUC40_RS01380 spoVAE 284858..285208 (-) 351 WP_000575919.1 stage V sporulation protein AE -
  EUC40_RS01385 spoVAD 285205..286221 (-) 1017 WP_156573302.1 stage V sporulation protein AD -
  EUC40_RS01390 spoVAC 286222..286698 (-) 477 WP_071710095.1 stage V sporulation protein AC -
  EUC40_RS01395 - 286727..287215 (-) 489 WP_156573304.1 YhcN/YlaJ family sporulation lipoprotein -
  EUC40_RS01400 - 287309..287515 (-) 207 WP_000216166.1 DUF1657 domain-containing protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21403.67 Da        Isoelectric Point: 5.0423

>NTDB_id=363332 EUC40_RS01365 WP_001049155.1 282927..283508(-) (clpP) [Bacillus luti strain FJ]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIYDT
MQFIKPQVSTICIGMAASMGAFLLAAGEKGKRFALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQ
PLEVLQRDTDRDNFMTAEKALEYGLIDKIFTNR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=363332 EUC40_RS01365 WP_001049155.1 282927..283508(-) (clpP) [Bacillus luti strain FJ]
ATGAATTTAATTCCTACAGTAATTGAACAAACAAATCGTGGAGAACGCGCTTACGATATTTACTCTCGACTATTAAAAGA
CCGCATCATTATGCTTGGTAGTGCAATTGATGACAACGTAGCTAACTCAATCGTTTCCCAGCTTTTATTCTTGGAATCTC
AAGATCCTGAAAAAGATATTCATATCTACATCAACAGCCCTGGTGGTTCTATCACAGCAGGTATGGCAATCTACGATACA
ATGCAGTTTATTAAACCGCAAGTATCAACAATCTGTATCGGTATGGCAGCATCTATGGGTGCATTCTTACTAGCAGCAGG
TGAAAAAGGAAAACGTTTCGCACTTCCAAACAGTGAAGTAATGATTCACCAACCACTTGGTGGAGCACAAGGTCAAGCGA
CTGAAATCGAAATCGCTGCAAAACGTATCCTATTCTTACGTGAAAAACTAAACCAAATTCTTGCTGACCGCACAGGTCAA
CCACTTGAAGTACTACAACGCGACACAGACCGTGACAACTTCATGACAGCAGAAAAAGCTCTAGAATACGGTTTAATTGA
TAAGATCTTTACAAATCGTTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A090YL26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

89.583

99.482

0.891
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.553

97.409

0.658
  clpP Streptococcus thermophilus LMG 18311

60.938

99.482

0.606
  clpP Streptococcus thermophilus LMD-9

60.938

99.482

0.606
  clpP Lactococcus lactis subsp. cremoris KW2

59.375

99.482

0.591
  clpP Streptococcus pneumoniae D39

57.812

99.482

0.575
  clpP Streptococcus pneumoniae Rx1

57.812

99.482

0.575
  clpP Streptococcus pneumoniae R6

57.812

99.482

0.575
  clpP Streptococcus pneumoniae TIGR4

57.812

99.482

0.575
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

57.292

99.482

0.57
  clpP Streptococcus mutans UA159

55.959

100

0.56
  clpP Streptococcus pyogenes JRS4

56.25

99.482

0.56
  clpP Streptococcus pyogenes MGAS315

56.25

99.482

0.56

Multiple sequence alignment