Detailed information
Bioinformatically predicted
Overview
| Name | clpP | Type | Regulator |
| Locus tag | SMI_RS07165 | Genome accession | NC_013853 |
| Coordinates | 1422687..1423277 (-) | Length | 196 a.a. |
| NCBI ID | WP_000613465.1 | Uniprot ID | - |
| Organism | Streptococcus mitis B6 | ||
| Function | degradation of ComX; degradation of ComW (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1410819..1426192 | 1422687..1423277 | within | 0 |
Gene organization within MGE regions
Location: 1410819..1426192
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SMI_RS07105 (smi_1405) | - | 1410819..1411985 (+) | 1167 | WP_000163009.1 | IS30-like element ISSmi1 family transposase | - |
| SMI_RS07110 (smi_1406) | ftsX | 1412322..1413248 (-) | 927 | WP_000625552.1 | permease-like cell division protein FtsX | - |
| SMI_RS07115 (smi_1407) | ftsE | 1413241..1413933 (-) | 693 | WP_000022265.1 | cell division ATP-binding protein FtsE | - |
| SMI_RS07125 (smi_1409) | - | 1415243..1416409 (+) | 1167 | WP_000163010.1 | IS30-like element ISSmi1 family transposase | - |
| SMI_RS07130 (smi_1410) | - | 1416711..1417367 (-) | 657 | WP_000268673.1 | CBS domain-containing protein | - |
| SMI_RS07135 (smi_1411) | - | 1417672..1418382 (-) | 711 | WP_000062202.1 | ABC transporter ATP-binding protein | - |
| SMI_RS07140 (smi_1412) | - | 1418382..1419146 (-) | 765 | WP_001185996.1 | ABC transporter ATP-binding protein | - |
| SMI_RS07145 (smi_1413) | - | 1419146..1420102 (-) | 957 | WP_000662291.1 | branched-chain amino acid ABC transporter permease | - |
| SMI_RS07150 (smi_1414) | - | 1420106..1420975 (-) | 870 | WP_000941427.1 | branched-chain amino acid ABC transporter permease | - |
| SMI_RS07155 (smi_1415) | - | 1421098..1422258 (-) | 1161 | WP_000726144.1 | ABC transporter substrate-binding protein | - |
| SMI_RS07160 (smi_1416) | - | 1422333..1422608 (-) | 276 | WP_000462119.1 | YlbG family protein | - |
| SMI_RS07165 (smi_1417) | clpP | 1422687..1423277 (-) | 591 | WP_000613465.1 | ATP-dependent Clp protease proteolytic subunit ClpP | Regulator |
| SMI_RS07170 (smi_1418) | upp | 1423451..1424080 (-) | 630 | WP_000515974.1 | uracil phosphoribosyltransferase | - |
| SMI_RS07175 (smi_1419) | - | 1424285..1425451 (+) | 1167 | WP_000163009.1 | IS30-like element ISSmi1 family transposase | - |
| SMI_RS07180 (smi_1420) | - | 1425725..1426192 (-) | 468 | WP_000136973.1 | deoxycytidylate deaminase | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 21354.39 Da Isoelectric Point: 4.5925
>NTDB_id=36325 SMI_RS07165 WP_000613465.1 1422687..1423277(-) (clpP) [Streptococcus mitis B6]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRKTLEKILAENSGQ
SIEKVHADAERDNWMSAQETLEYGFIDEIMANNSLN
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRKTLEKILAENSGQ
SIEKVHADAERDNWMSAQETLEYGFIDEIMANNSLN
Nucleotide
Download Length: 591 bp
>NTDB_id=36325 SMI_RS07165 WP_000613465.1 1422687..1423277(-) (clpP) [Streptococcus mitis B6]
ATGATTCCTGTAGTTATTGAACAAACAAGCCGTGGAGAACGTTCTTACGATATATACTCACGTCTTCTCAAAGACCGCAT
CATTATGCTGACAGGTCCCGTTGAAGACAATATGGCTAACTCTGTTATTGCCCAGTTGCTTTTCTTGGATGCCCAAGATA
GTACAAAAGATATTTACCTTTATGTCAATACACCTGGTGGTTCCGTTTCAGCTGGTTTGGCAATCGTTGATACCATGAAC
TTTATCAAGGCAGATGTCCAAACCATCGTTATGGGAATGGCTGCATCTATGGGTACAGTCATTGCATCAAGTGGAGCAAA
AGGCAAACGTTTCATGCTTCCAAATGCAGAGTATATGATCCACCAACCAATGGGTGGTACAGGTGGTGGTACTCAACAAA
CCGATATGGCGATTGCTGCAGAACATTTGCTTAAAACTCGTAAAACCTTGGAAAAAATCTTGGCTGAAAATTCAGGTCAG
TCAATCGAAAAAGTCCACGCAGATGCAGAACGCGATAACTGGATGAGCGCCCAAGAAACACTCGAATATGGCTTTATTGA
TGAAATCATGGCTAACAATTCATTGAACTAA
ATGATTCCTGTAGTTATTGAACAAACAAGCCGTGGAGAACGTTCTTACGATATATACTCACGTCTTCTCAAAGACCGCAT
CATTATGCTGACAGGTCCCGTTGAAGACAATATGGCTAACTCTGTTATTGCCCAGTTGCTTTTCTTGGATGCCCAAGATA
GTACAAAAGATATTTACCTTTATGTCAATACACCTGGTGGTTCCGTTTCAGCTGGTTTGGCAATCGTTGATACCATGAAC
TTTATCAAGGCAGATGTCCAAACCATCGTTATGGGAATGGCTGCATCTATGGGTACAGTCATTGCATCAAGTGGAGCAAA
AGGCAAACGTTTCATGCTTCCAAATGCAGAGTATATGATCCACCAACCAATGGGTGGTACAGGTGGTGGTACTCAACAAA
CCGATATGGCGATTGCTGCAGAACATTTGCTTAAAACTCGTAAAACCTTGGAAAAAATCTTGGCTGAAAATTCAGGTCAG
TCAATCGAAAAAGTCCACGCAGATGCAGAACGCGATAACTGGATGAGCGCCCAAGAAACACTCGAATATGGCTTTATTGA
TGAAATCATGGCTAACAATTCATTGAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpP | Streptococcus pneumoniae Rx1 |
98.98 |
100 |
0.99 |
| clpP | Streptococcus pneumoniae D39 |
98.98 |
100 |
0.99 |
| clpP | Streptococcus pneumoniae R6 |
98.98 |
100 |
0.99 |
| clpP | Streptococcus pneumoniae TIGR4 |
98.98 |
100 |
0.99 |
| clpP | Streptococcus thermophilus LMG 18311 |
92.821 |
99.49 |
0.923 |
| clpP | Streptococcus thermophilus LMD-9 |
92.821 |
99.49 |
0.923 |
| clpP | Streptococcus pyogenes JRS4 |
91.282 |
99.49 |
0.908 |
| clpP | Streptococcus pyogenes MGAS315 |
91.282 |
99.49 |
0.908 |
| clpP | Streptococcus mutans UA159 |
87.179 |
99.49 |
0.867 |
| clpP | Lactococcus lactis subsp. lactis strain DGCC12653 |
85.641 |
99.49 |
0.852 |
| clpP | Lactococcus lactis subsp. cremoris KW2 |
85.128 |
99.49 |
0.847 |
| clpP | Bacillus subtilis subsp. subtilis str. 168 |
58.854 |
97.959 |
0.577 |
| clpP | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
58.031 |
98.469 |
0.571 |