Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   FD735_RS01365 Genome accession   NZ_CP040231
Coordinates   236237..238216 (+) Length   659 a.a.
NCBI ID   WP_049505183.1    Uniprot ID   A0A5B7Y4W1
Organism   Streptococcus sp. 1643     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 231237..243216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD735_RS01335 (FD735_01335) - 231679..231909 (+) 231 WP_002892633.1 DUF1146 family protein -
  FD735_RS01340 (FD735_01340) murA 231933..233216 (+) 1284 WP_049505186.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  FD735_RS01345 (FD735_01345) - 233203..233397 (+) 195 WP_000739701.1 DNA-directed RNA polymerase subunit beta -
  FD735_RS01350 (FD735_01350) endA 233438..234262 (+) 825 WP_049505185.1 DNA/RNA non-specific endonuclease Machinery gene
  FD735_RS01355 (FD735_01355) - 234403..235734 (+) 1332 WP_071851874.1 hemolysin family protein -
  FD735_RS01365 (FD735_01365) amiA 236237..238216 (+) 1980 WP_049505183.1 peptide ABC transporter substrate-binding protein Regulator
  FD735_RS01370 (FD735_01370) amiC 238283..239779 (+) 1497 WP_000759891.1 ABC transporter permease Regulator
  FD735_RS01375 (FD735_01375) amiD 239779..240705 (+) 927 WP_000103692.1 oligopeptide ABC transporter permease OppC Regulator
  FD735_RS01380 (FD735_01380) amiE 240714..241781 (+) 1068 WP_139658306.1 ABC transporter ATP-binding protein Regulator
  FD735_RS01385 (FD735_01385) amiF 241792..242721 (+) 930 WP_001291311.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72720.90 Da        Isoelectric Point: 4.8748

>NTDB_id=362625 FD735_RS01365 WP_049505183.1 236237..238216(+) (amiA) [Streptococcus sp. 1643]
MKKSRVFVAAGVALLAAGVLAACGSSKSSDSTAPKNYGYIYSADPETLDYLISGKQSTKVATSNGIDGLFTNDKYGNLVP
AVAEDWSVSKDGLTYTYKIRKGVKWMTSDGEEYAEVTAKDFVNGLKHATDNKSEALYLAEDSVKGLADYKAGNNKDFASV
GVKAVDDYTLEYTLNKPEPYWNSKLAYSIFWPLNEDFEKSKGADFAKATDPTSLLYNGPFLLKGLTAKSSIEFAKNENYW
DKDNVHIDKVTLAFYDGSDQESLERNFTSGAYSYARLFPTSSNYSKVEETYKDNIYYTPSGPGIAGLGVNIDRQGYKYTS
KTTDEEKTSTKKALLNKDFRQALNFAFERTSYSAQINGKEGAPLAVRNLFVKPGFVSAGEKTFGDLVTEKMAAYGDEWKN
VNFADGQDGLFNADKAKAEFAKAKTALEAEGVKFPIHLDIPVDQTNKGLIARIQSFKQSVETVLGEGNVVIDIQQISKDE
LHNITYYAANAAAEDWDLSGAVGWSPDYEDPSTYLDILKTTNSEQTKTYMGYDDPANAAAAQVGLKEYDKLVDEAAKETN
DLNVRYEKYAAAQAWLTDSSLFLPAMSSSGAAPFISRVVPFTASYSQSGDKGSDVYFKYIQLQDKVVTKADYEQAREKWL
KEKKESNEKVQKELANHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=362625 FD735_RS01365 WP_049505183.1 236237..238216(+) (amiA) [Streptococcus sp. 1643]
ATGAAAAAAAGTAGAGTATTTGTTGCAGCAGGAGTTGCTTTATTAGCAGCAGGAGTACTAGCTGCTTGCGGTTCTTCAAA
ATCATCTGATTCAACAGCGCCAAAAAATTATGGCTATATTTATTCAGCTGACCCAGAAACTTTGGATTACCTCATTTCAG
GGAAACAAAGTACTAAGGTTGCCACTTCAAATGGTATCGATGGTCTTTTCACAAACGACAAGTATGGGAACCTAGTCCCT
GCAGTTGCAGAAGACTGGTCAGTTTCAAAAGATGGTTTGACTTATACCTACAAGATTCGTAAAGGTGTCAAATGGATGAC
ATCAGATGGCGAAGAGTATGCTGAAGTGACAGCTAAAGACTTTGTAAATGGCTTGAAACACGCAACTGATAACAAGTCTG
AAGCACTTTATCTAGCAGAAGATTCAGTTAAAGGTCTAGCTGACTATAAAGCTGGAAACAATAAAGATTTTGCTTCAGTC
GGTGTAAAAGCAGTTGATGATTATACCCTTGAATACACTTTGAACAAACCAGAACCATACTGGAACTCTAAGCTAGCCTA
CTCAATCTTCTGGCCATTGAACGAAGATTTTGAAAAATCAAAAGGGGCTGACTTTGCCAAAGCAACTGACCCTACATCAT
TGCTTTACAATGGTCCGTTCTTACTGAAAGGTTTGACTGCTAAATCTTCTATTGAGTTCGCTAAGAATGAAAACTACTGG
GACAAAGATAATGTTCACATTGATAAAGTAACCCTTGCTTTCTATGATGGATCAGACCAAGAGTCTCTTGAACGTAACTT
TACAAGTGGAGCTTATAGCTATGCTCGTCTCTTCCCAACAAGTTCAAACTACTCTAAGGTAGAAGAAACATACAAAGACA
ATATCTACTACACTCCATCAGGACCTGGTATTGCTGGTTTGGGTGTGAATATTGACCGTCAAGGTTACAAATACACTTCT
AAAACAACTGATGAAGAGAAGACTTCTACCAAGAAAGCCCTTCTTAACAAGGACTTCCGTCAGGCTTTGAACTTCGCCTT
TGAGCGTACTTCTTACTCAGCACAAATTAATGGTAAAGAAGGTGCTCCTCTTGCAGTTCGTAACCTCTTTGTGAAACCAG
GTTTTGTCTCTGCAGGTGAAAAAACTTTCGGTGACTTGGTAACTGAAAAGATGGCTGCTTACGGTGATGAGTGGAAGAAT
GTTAACTTTGCGGATGGTCAAGATGGACTCTTCAACGCCGATAAAGCCAAAGCTGAATTTGCCAAAGCTAAGACTGCTTT
GGAAGCAGAAGGTGTGAAATTCCCTATCCACTTGGATATTCCAGTTGACCAAACAAATAAGGGTCTTATTGCTCGTATTC
AATCCTTCAAACAATCCGTTGAAACAGTACTTGGTGAAGGAAACGTAGTCATTGATATTCAACAAATTTCTAAAGATGAG
TTGCACAATATCACATACTATGCCGCAAACGCTGCAGCAGAAGATTGGGATCTCTCAGGAGCAGTTGGATGGAGCCCAGA
CTATGAAGATCCATCAACTTACCTTGATATCTTGAAAACAACTAACAGCGAACAAACAAAAACTTACATGGGTTATGATG
ATCCAGCAAATGCAGCAGCTGCCCAAGTTGGTTTGAAGGAATACGATAAGTTAGTTGATGAAGCTGCAAAAGAAACCAAT
GACTTGAATGTGCGTTATGAAAAATATGCGGCTGCTCAAGCTTGGTTGACAGACAGCTCCCTCTTCTTGCCAGCTATGTC
ATCAAGTGGTGCTGCACCATTCATTTCTCGTGTTGTACCATTCACAGCATCATACAGCCAATCTGGAGATAAGGGCTCAG
ACGTATACTTCAAGTATATTCAGTTACAAGATAAGGTTGTAACAAAAGCTGACTATGAACAAGCTCGTGAAAAATGGCTC
AAAGAGAAAAAAGAATCAAACGAAAAAGTTCAAAAAGAATTGGCTAATCACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B7Y4W1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

68.437

100

0.684
  amiA3 Streptococcus thermophilus LMG 18311

68.03

100

0.681
  amiA3 Streptococcus thermophilus LMD-9

67.879

100

0.68

Multiple sequence alignment