Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   FD735_RS01385 Genome accession   NZ_CP040231
Coordinates   241792..242721 (+) Length   309 a.a.
NCBI ID   WP_001291311.1    Uniprot ID   A0A291D7C0
Organism   Streptococcus sp. 1643     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 236792..247721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD735_RS01370 (FD735_01370) amiC 238283..239779 (+) 1497 WP_000759891.1 ABC transporter permease Regulator
  FD735_RS01375 (FD735_01375) amiD 239779..240705 (+) 927 WP_000103692.1 oligopeptide ABC transporter permease OppC Regulator
  FD735_RS01380 (FD735_01380) amiE 240714..241781 (+) 1068 WP_139658306.1 ABC transporter ATP-binding protein Regulator
  FD735_RS01385 (FD735_01385) amiF 241792..242721 (+) 930 WP_001291311.1 ATP-binding cassette domain-containing protein Regulator
  FD735_RS01390 (FD735_01390) - 242810..244249 (-) 1440 WP_139658307.1 TrkH family potassium uptake protein -
  FD735_RS01395 (FD735_01395) trkA 244253..245602 (-) 1350 WP_139658308.1 Trk system potassium transporter TrkA -
  FD735_RS01405 (FD735_01405) - 246002..246505 (+) 504 WP_000181365.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  FD735_RS01410 (FD735_01410) - 247038..247601 (+) 564 WP_139658309.1 ECF transporter S component -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35053.25 Da        Isoelectric Point: 7.0424

>NTDB_id=362629 FD735_RS01385 WP_001291311.1 241792..242721(+) (amiF) [Streptococcus sp. 1643]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNNTSKGEIIFDGHKINGKKSHK
ESSDLIRRIQMIFQDPAASLNERATVDYIISEGLYNYHLFKDEEDRKEKVQKMIHEVGLLKEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPVHPYTQALLSAVPIPDPILERKKVLKVYDPDQHDYETDKPSMVEIRPGHYVWANQAEVARYKEALKK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=362629 FD735_RS01385 WP_001291311.1 241792..242721(+) (amiF) [Streptococcus sp. 1643]
ATGTCTGAAAAATTAGTAGAAATTAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
CGCCAACTTCTTTATCAACAAGGGAGAAACCTTCTCTCTTGTTGGTGAGTCTGGTAGTGGGAAAACAACGATTGGTCGTG
CCATTATTGGTCTAAATAATACTAGTAAAGGTGAGATCATCTTTGATGGTCATAAAATTAATGGGAAAAAATCTCATAAG
GAATCATCAGACTTGATCCGTCGTATCCAGATGATTTTCCAGGACCCTGCAGCTAGCTTGAATGAGCGTGCAACAGTTGA
CTATATTATCTCTGAAGGTCTTTACAACTACCATTTGTTCAAAGACGAAGAAGATCGAAAAGAAAAAGTTCAAAAGATGA
TTCATGAAGTTGGACTTTTGAAAGAACACTTAACCCGTTATCCACACGAGTTTTCTGGTGGTCAACGCCAGCGTATCGGG
ATTGCCCGTGCCCTTGTGATGGAACCTGATTTCGTTATTGCGGATGAGCCAATTTCAGCCTTGGACGTATCAGTACGTGC
GCAAGTCTTGAACTTACTCAAGAAGTTCCAAAAAGAGTTGGGATTGACCTATCTCTTTATCGCGCATGACTTGTCAGTTG
TTCGCTTTATCTCAGATCGTATCGCGGTTATCTATAAGGGAGTTATCGTCGAGGTGGCGGAGACAGAGGAGTTGTTTAAC
AATCCTGTCCACCCATACACTCAAGCGCTTCTATCTGCTGTACCAATTCCAGATCCAATCTTGGAACGCAAGAAGGTCTT
GAAAGTTTACGATCCTGACCAACATGACTATGAGACAGACAAGCCATCTATGGTAGAAATTCGTCCAGGTCACTATGTTT
GGGCTAACCAAGCAGAAGTTGCTCGATACAAAGAAGCTCTTAAAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A291D7C0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

85.113

100

0.851
  amiF Streptococcus thermophilus LMG 18311

84.142

100

0.841
  amiF Streptococcus thermophilus LMD-9

83.819

100

0.838

Multiple sequence alignment