Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   FD735_RS01375 Genome accession   NZ_CP040231
Coordinates   239779..240705 (+) Length   308 a.a.
NCBI ID   WP_000103692.1    Uniprot ID   A0A081R278
Organism   Streptococcus sp. 1643     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 234779..245705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD735_RS01365 (FD735_01365) amiA 236237..238216 (+) 1980 WP_049505183.1 peptide ABC transporter substrate-binding protein Regulator
  FD735_RS01370 (FD735_01370) amiC 238283..239779 (+) 1497 WP_000759891.1 ABC transporter permease Regulator
  FD735_RS01375 (FD735_01375) amiD 239779..240705 (+) 927 WP_000103692.1 oligopeptide ABC transporter permease OppC Regulator
  FD735_RS01380 (FD735_01380) amiE 240714..241781 (+) 1068 WP_139658306.1 ABC transporter ATP-binding protein Regulator
  FD735_RS01385 (FD735_01385) amiF 241792..242721 (+) 930 WP_001291311.1 ATP-binding cassette domain-containing protein Regulator
  FD735_RS01390 (FD735_01390) - 242810..244249 (-) 1440 WP_139658307.1 TrkH family potassium uptake protein -
  FD735_RS01395 (FD735_01395) trkA 244253..245602 (-) 1350 WP_139658308.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34667.68 Da        Isoelectric Point: 9.0162

>NTDB_id=362627 FD735_RS01375 WP_000103692.1 239779..240705(+) (amiD) [Streptococcus sp. 1643]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWGSVFRQFLKKKSTVFMLGILVAIILMSFIYPMFSDFDFNDVSKVNDFSAR
FIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATFINLVIGVIVGGIWGISKSVDRVMMEVYNIISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAYMIRIQIMRYRDLEYNLASQTLGTPTFKIIVKNIMPQLVSVIVSTMTLMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=362627 FD735_RS01375 WP_000103692.1 239779..240705(+) (amiD) [Streptococcus sp. 1643]
ATGTCAACAATCGATAAAGAAAAATTTCAGTTCGTAAAACGTGACGATTTTGCCTCTGAAACAATTGATGCTCCTGCCTA
TTCATACTGGGGTTCTGTATTTAGACAATTTCTAAAGAAAAAATCAACCGTCTTTATGCTAGGAATTTTGGTTGCCATTA
TTTTGATGAGCTTTATTTACCCAATGTTCTCAGATTTTGACTTCAACGATGTAAGTAAGGTCAATGACTTCTCTGCTCGT
TTTATCAAGCCCAATGCTGAACATTGGTTTGGTACAGATAGCAATGGTAAATCCTTGTTTGATGGGGTTTGGTTTGGTGC
GCGTAATTCAATTCTTATCTCTGTAATTGCCACTTTTATCAACCTTGTGATCGGGGTTATTGTTGGTGGAATTTGGGGGA
TTTCAAAATCCGTTGACCGCGTCATGATGGAAGTTTATAACATTATTTCAAACATTCCATCTCTCTTGATTGTCATTGTC
TTGACTTACTCAATTGGTGCTGGTTTCTGGAATTTGATTTTTGCCATGAGTGTGACAACTTGGATTGGGATTGCTTATAT
GATTCGTATCCAAATCATGCGTTACCGTGACTTGGAATACAACCTTGCTTCTCAAACACTTGGAACACCAACCTTTAAAA
TCATTGTTAAAAACATCATGCCGCAATTGGTATCTGTTATTGTTTCTACAATGACCTTGATGTTGCCAAGCTTTATCTCT
TATGAAGCCTTCCTTTCCTTCTTTGGATTGGGACTGCCTGTAACAGTGCCAAGTTTGGGACGTTTGATCTCAGATTACTC
ACAAAACGTTACGACCAACGCTTACTTGTTCTGGATTCCATTGACTACCTTGATTTTGGTATCTCTATCTCTTTTTGTTG
TTGGTCAAAACCTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(123-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A081R278

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.442

100

0.834
  amiD Streptococcus thermophilus LMG 18311

81.818

100

0.818
  amiD Streptococcus thermophilus LMD-9

81.818

100

0.818

Multiple sequence alignment