Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FD491_RS13610 Genome accession   NZ_CP040230
Coordinates   2776816..2777286 (+) Length   156 a.a.
NCBI ID   WP_000934764.1    Uniprot ID   A0A9P4DKA4
Organism   Staphylococcus aureus strain GD1108     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2754500..2782542 2776816..2777286 within 0


Gene organization within MGE regions


Location: 2754500..2782542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD491_RS13455 (FD491_10210) groES 2754500..2754784 (+) 285 WP_000917289.1 co-chaperone GroES -
  FD491_RS13460 (FD491_10205) groL 2754860..2756476 (+) 1617 WP_000240642.1 chaperonin GroEL -
  FD491_RS13465 (FD491_10200) - 2757017..2757196 (+) 180 WP_000201398.1 hypothetical protein -
  FD491_RS13470 - 2757193..2757819 (+) 627 WP_000216896.1 hypothetical protein -
  FD491_RS13475 (FD491_10180) - 2758358..2759665 (-) 1308 WP_001045074.1 TrkH family potassium uptake protein -
  FD491_RS13480 (FD491_10175) - 2760048..2761271 (-) 1224 WP_000206618.1 ArgE/DapE family deacylase -
  FD491_RS13485 (FD491_10170) - 2761703..2762758 (+) 1056 WP_000791397.1 leukocidin family pore-forming toxin -
  FD491_RS13490 (FD491_10165) - 2762780..2763796 (+) 1017 WP_000595612.1 leukocidin/hemolysin toxin family protein -
  FD491_RS13495 (FD491_10160) sph 2764058..2764882 (-) 825 Protein_2654 sphingomyelin phosphodiesterase -
  FD491_RS13500 (FD491_10155) - 2764939..2765976 (-) 1038 WP_000857185.1 site-specific integrase -
  FD491_RS13505 (FD491_10150) - 2766035..2766499 (-) 465 WP_000825947.1 hypothetical protein -
  FD491_RS13510 (FD491_10145) - 2766599..2766781 (-) 183 WP_000705248.1 hypothetical protein -
  FD491_RS13515 (FD491_10140) - 2766985..2767326 (-) 342 WP_000591749.1 hypothetical protein -
  FD491_RS13520 (FD491_10135) - 2767332..2768264 (-) 933 WP_000759682.1 exonuclease domain-containing protein -
  FD491_RS13525 (FD491_10130) - 2768280..2768993 (-) 714 WP_001031454.1 XRE family transcriptional regulator -
  FD491_RS13530 (FD491_10125) - 2768956..2769129 (+) 174 WP_001801500.1 hypothetical protein -
  FD491_RS13535 (FD491_10120) - 2769126..2769389 (+) 264 WP_000854072.1 helix-turn-helix transcriptional regulator -
  FD491_RS13540 (FD491_10115) - 2769405..2769620 (+) 216 WP_001025874.1 MW1434 family type I TA system toxin -
  FD491_RS13545 (FD491_10110) - 2769609..2769938 (-) 330 WP_000128907.1 hypothetical protein -
  FD491_RS13550 (FD491_10105) - 2769989..2770741 (+) 753 WP_001148605.1 phage antirepressor KilAC domain-containing protein -
  FD491_RS13555 (FD491_10100) - 2770757..2770954 (+) 198 WP_001148855.1 hypothetical protein -
  FD491_RS13560 (FD491_10095) - 2770985..2771125 (+) 141 WP_000939496.1 hypothetical protein -
  FD491_RS13565 (FD491_10090) - 2771140..2771772 (-) 633 WP_000275058.1 hypothetical protein -
  FD491_RS13570 (FD491_10085) - 2771831..2772151 (+) 321 WP_001120197.1 DUF771 domain-containing protein -
  FD491_RS13575 (FD491_10080) - 2772148..2772309 (+) 162 WP_000066017.1 DUF1270 domain-containing protein -
  FD491_RS13580 (FD491_10075) - 2772404..2772730 (+) 327 WP_000165375.1 DUF2482 family protein -
  FD491_RS13585 (FD491_10070) - 2772711..2772971 (+) 261 WP_000291503.1 DUF1108 family protein -
  FD491_RS13590 (FD491_10065) - 2772980..2773243 (+) 264 WP_001205732.1 hypothetical protein -
  FD491_RS13595 (FD491_10060) - 2773252..2775195 (+) 1944 WP_000700577.1 AAA family ATPase -
  FD491_RS13600 (FD491_10055) - 2775197..2776117 (+) 921 WP_138742486.1 recombinase RecT -
  FD491_RS13605 (FD491_10050) - 2776198..2776815 (+) 618 WP_071621397.1 MBL fold metallo-hydrolase -
  FD491_RS13610 (FD491_10045) ssbA 2776816..2777286 (+) 471 WP_000934764.1 single-stranded DNA-binding protein Machinery gene
  FD491_RS13615 (FD491_10040) - 2777316..2778200 (+) 885 WP_000148316.1 DnaD domain protein -
  FD491_RS13620 (FD491_10035) - 2778207..2778425 (+) 219 WP_000338530.1 hypothetical protein -
  FD491_RS13625 (FD491_10030) - 2778434..2778838 (+) 405 WP_000401960.1 RusA family crossover junction endodeoxyribonuclease -
  FD491_RS13630 (FD491_10025) - 2778851..2779219 (+) 369 WP_000101274.1 SA1788 family PVL leukocidin-associated protein -
  FD491_RS13635 (FD491_10020) - 2779223..2779465 (+) 243 WP_000131366.1 SAV1978 family virulence-associated passenger protein -
  FD491_RS13640 - 2779471..2779644 (+) 174 WP_001793974.1 hypothetical protein -
  FD491_RS13645 (FD491_10015) - 2779637..2779888 (+) 252 WP_001065091.1 DUF1024 family protein -
  FD491_RS13650 (FD491_10010) - 2779878..2780060 (+) 183 WP_000028422.1 hypothetical protein -
  FD491_RS13655 (FD491_10005) - 2780053..2780595 (+) 543 WP_000185660.1 dUTP diphosphatase -
  FD491_RS13660 (FD491_10000) - 2780632..2780838 (+) 207 WP_000195803.1 DUF1381 domain-containing protein -
  FD491_RS13665 (FD491_09995) - 2780835..2781221 (+) 387 WP_000592207.1 hypothetical protein -
  FD491_RS13670 (FD491_09990) rinB 2781218..2781367 (+) 150 WP_000595265.1 transcriptional activator RinB -
  FD491_RS13675 (FD491_09985) - 2781367..2781567 (+) 201 WP_000265043.1 DUF1514 family protein -
  FD491_RS13680 (FD491_09980) - 2781595..2782011 (+) 417 WP_000590122.1 hypothetical protein -
  FD491_RS13685 (FD491_09975) - 2782243..2782542 (+) 300 WP_000988336.1 HNH endonuclease -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17627.49 Da        Isoelectric Point: 5.2672

>NTDB_id=362608 FD491_RS13610 WP_000934764.1 2776816..2777286(+) (ssbA) [Staphylococcus aureus strain GD1108]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=362608 FD491_RS13610 WP_000934764.1 2776816..2777286(+) (ssbA) [Staphylococcus aureus strain GD1108]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.932

100

0.635
  ssb Latilactobacillus sakei subsp. sakei 23K

51.176

100

0.558
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Neisseria meningitidis MC58

33.526

100

0.372
  ssb Neisseria gonorrhoeae MS11

33.526

100

0.372
  ssb Glaesserella parasuis strain SC1401

32.768

100

0.372
  ssb Vibrio cholerae strain A1552

31.492

100

0.365

Multiple sequence alignment