Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | FDF20_RS16925 | Genome accession | NZ_CP040050 |
| Coordinates | 3480019..3480480 (-) | Length | 153 a.a. |
| NCBI ID | WP_000993718.1 | Uniprot ID | A0A9P2XM63 |
| Organism | Acinetobacter baumannii strain VB16141 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3475019..3485480
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FDF20_RS16905 (FDF20_16905) | - | 3476613..3476996 (+) | 384 | WP_000090000.1 | RidA family protein | - |
| FDF20_RS16910 (FDF20_16910) | - | 3477206..3477400 (+) | 195 | WP_000289091.1 | bacterioferritin-associated ferredoxin | - |
| FDF20_RS16915 (FDF20_16915) | bfr | 3477645..3478109 (+) | 465 | WP_000678123.1 | bacterioferritin | - |
| FDF20_RS16920 (FDF20_16920) | - | 3478149..3479777 (-) | 1629 | WP_001195771.1 | PglL family O-oligosaccharyltransferase | - |
| FDF20_RS16925 (FDF20_16925) | pilA | 3480019..3480480 (-) | 462 | WP_000993718.1 | pilin | Machinery gene |
| FDF20_RS16930 (FDF20_16930) | - | 3480824..3481384 (-) | 561 | WP_000258949.1 | TPM domain-containing protein | - |
| FDF20_RS16935 (FDF20_16935) | - | 3481378..3482460 (-) | 1083 | WP_045543712.1 | TPM domain-containing protein | - |
| FDF20_RS16940 (FDF20_16940) | - | 3482482..3483072 (-) | 591 | WP_000846931.1 | LemA family protein | - |
| FDF20_RS16945 (FDF20_16945) | - | 3483203..3484090 (-) | 888 | WP_001017330.1 | metal-dependent hydrolase | - |
Sequence
Protein
Download Length: 153 a.a. Molecular weight: 15449.52 Da Isoelectric Point: 4.9218
>NTDB_id=361822 FDF20_RS16925 WP_000993718.1 3480019..3480480(-) (pilA) [Acinetobacter baumannii strain VB16141]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQNYVARSQATAGYSEISNMRTGYDTELNDGTAITSLSQVGFTATSSGACS
AIGVTNFGNDGAATNAITCTLKGNPKIAGKIISLSRSATGAWTCSTDIATTDEFLPKGCTGGGTPAVGAITTL
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQNYVARSQATAGYSEISNMRTGYDTELNDGTAITSLSQVGFTATSSGACS
AIGVTNFGNDGAATNAITCTLKGNPKIAGKIISLSRSATGAWTCSTDIATTDEFLPKGCTGGGTPAVGAITTL
Nucleotide
Download Length: 462 bp
>NTDB_id=361822 FDF20_RS16925 WP_000993718.1 3480019..3480480(-) (pilA) [Acinetobacter baumannii strain VB16141]
ATGAATGCACAAAAAGGTTTTACATTAATCGAACTTATGATCGTGGTTGCCATTATTGGTATTTTGGCTGCGATTGCGAT
TCCTGCTTATCAAAATTATGTAGCTCGTTCTCAGGCTACAGCTGGATATTCTGAAATTAGTAACATGCGTACGGGTTACG
ACACCGAATTAAATGATGGTACAGCGATTACCTCTCTTTCTCAAGTTGGCTTTACTGCGACTTCATCTGGCGCATGTTCA
GCCATAGGTGTTACAAATTTTGGTAACGATGGCGCAGCTACTAACGCTATTACGTGTACTTTAAAAGGAAATCCAAAAAT
CGCTGGAAAGATTATTTCACTTTCACGTTCAGCGACCGGTGCATGGACTTGTAGTACAGATATTGCCACTACTGACGAAT
TCTTACCAAAAGGATGTACGGGTGGTGGAACACCAGCCGTTGGTGCAATTACTACTTTGTAA
ATGAATGCACAAAAAGGTTTTACATTAATCGAACTTATGATCGTGGTTGCCATTATTGGTATTTTGGCTGCGATTGCGAT
TCCTGCTTATCAAAATTATGTAGCTCGTTCTCAGGCTACAGCTGGATATTCTGAAATTAGTAACATGCGTACGGGTTACG
ACACCGAATTAAATGATGGTACAGCGATTACCTCTCTTTCTCAAGTTGGCTTTACTGCGACTTCATCTGGCGCATGTTCA
GCCATAGGTGTTACAAATTTTGGTAACGATGGCGCAGCTACTAACGCTATTACGTGTACTTTAAAAGGAAATCCAAAAAT
CGCTGGAAAGATTATTTCACTTTCACGTTCAGCGACCGGTGCATGGACTTGTAGTACAGATATTGCCACTACTGACGAAT
TCTTACCAAAAGGATGTACGGGTGGTGGAACACCAGCCGTTGGTGCAATTACTACTTTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter baumannii strain A118 |
64.286 |
100 |
0.647 |
| pilA | Pseudomonas aeruginosa PAK |
43.709 |
98.693 |
0.431 |
| pilA | Vibrio cholerae strain A1552 |
42.581 |
100 |
0.431 |
| pilA | Vibrio cholerae C6706 |
42.581 |
100 |
0.431 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
42.581 |
100 |
0.431 |
| comP | Acinetobacter baylyi ADP1 |
39.744 |
100 |
0.405 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
43.357 |
93.464 |
0.405 |