Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   GVI48_RS15010 Genome accession   NZ_CP047697
Coordinates   3200452..3201093 (+) Length   213 a.a.
NCBI ID   WP_003098129.1    Uniprot ID   A0A0H2Z9P5
Organism   Pseudomonas aeruginosa strain RD1-3     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3195452..3206093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVI48_RS14995 parS 3196822..3198108 (-) 1287 WP_003087912.1 sensor histidine kinase ParS -
  GVI48_RS15000 parR 3198109..3198816 (-) 708 WP_003098126.1 response regulator transcription factor ParR -
  GVI48_RS15005 tig 3199048..3200358 (+) 1311 WP_003087920.1 trigger factor -
  GVI48_RS15010 clpP 3200452..3201093 (+) 642 WP_003098129.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  GVI48_RS15015 clpX 3201198..3202478 (+) 1281 WP_003087924.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  GVI48_RS15020 lon 3202610..3205006 (+) 2397 WP_003087926.1 endopeptidase La -
  GVI48_RS15025 hupB 3205142..3205414 (+) 273 WP_003087931.1 nucleoid-associated protein HU-beta -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23502.14 Da        Isoelectric Point: 6.3772

>NTDB_id=360877 GVI48_RS15010 WP_003098129.1 3200452..3201093(+) (clpP) [Pseudomonas aeruginosa strain RD1-3]
MSRNSFIPHVPDIQAAGGLVPMVVEQSARGERAYDIYSRLLKERIIFLVGQVEDYMANLVVAQLLFLEAENPEKDIHLYI
NSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGALLLAGGAAGKRYCLPHSRMMIHQPLGGFQGQASDIEIHAKEIL
FIKERLNQILAHHTGQPLDVIARDTDRDRFMSGDEAVKYGLIDKVMTQRDLAV

Nucleotide


Download         Length: 642 bp        

>NTDB_id=360877 GVI48_RS15010 WP_003098129.1 3200452..3201093(+) (clpP) [Pseudomonas aeruginosa strain RD1-3]
ATGTCTCGCAACTCTTTTATTCCGCACGTTCCCGATATCCAGGCCGCCGGTGGCCTGGTGCCCATGGTGGTGGAGCAGTC
CGCCCGCGGCGAGCGCGCCTACGACATCTATTCGCGCCTGCTGAAGGAGCGGATCATCTTCCTGGTCGGCCAGGTCGAGG
ACTACATGGCCAACCTGGTGGTTGCCCAGTTGCTGTTCCTGGAGGCTGAAAATCCCGAGAAGGACATTCATCTCTACATC
AACTCGCCGGGTGGTTCGGTGACTGCCGGGATGTCCATCTACGACACCATGCAGTTCATCAAGCCCAACGTCTCGACCAC
CTGTATCGGCCAGGCGTGCAGCATGGGTGCCCTGCTGCTTGCGGGCGGTGCCGCCGGCAAGCGCTACTGCCTGCCGCATT
CGCGGATGATGATCCACCAGCCGCTGGGCGGTTTCCAGGGCCAGGCCTCGGATATCGAGATCCATGCCAAGGAAATCCTC
TTCATCAAGGAGCGTCTGAACCAGATCCTGGCGCACCACACCGGCCAGCCCCTGGACGTCATTGCCCGCGATACCGATCG
TGACCGCTTCATGAGCGGTGACGAAGCCGTCAAGTATGGCCTGATCGACAAGGTCATGACCCAGCGCGACCTGGCCGTCT
AA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(29-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2Z9P5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

67.708

90.141

0.61
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.789

89.202

0.587
  clpP Lactococcus lactis subsp. cremoris KW2

53.299

92.488

0.493
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.777

92.488

0.479
  clpP Streptococcus mutans UA159

50.51

92.019

0.465
  clpP Streptococcus pneumoniae R6

50.769

91.549

0.465
  clpP Streptococcus pneumoniae TIGR4

50.769

91.549

0.465
  clpP Streptococcus pyogenes JRS4

50.769

91.549

0.465
  clpP Streptococcus pyogenes MGAS315

50.769

91.549

0.465
  clpP Streptococcus thermophilus LMG 18311

50.769

91.549

0.465
  clpP Streptococcus thermophilus LMD-9

50.769

91.549

0.465
  clpP Streptococcus pneumoniae Rx1

50.769

91.549

0.465
  clpP Streptococcus pneumoniae D39

50.769

91.549

0.465