Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   FAY30_RS24615 Genome accession   NZ_CP039727
Coordinates   5164031..5164408 (-) Length   125 a.a.
NCBI ID   WP_149872311.1    Uniprot ID   -
Organism   Bacillus sp. S3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5159031..5169408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAY30_RS24580 (FAY30_24580) - 5159085..5159342 (-) 258 WP_149872304.1 DUF3949 domain-containing protein -
  FAY30_RS24585 (FAY30_24585) - 5159405..5160466 (-) 1062 WP_149872305.1 hypothetical protein -
  FAY30_RS24590 (FAY30_24590) - 5160765..5161883 (-) 1119 WP_149872306.1 3D domain-containing protein -
  FAY30_RS24595 (FAY30_24595) - 5162271..5162690 (-) 420 WP_149872307.1 hypothetical protein -
  FAY30_RS24600 (FAY30_24600) - 5162920..5163333 (+) 414 WP_190284772.1 helix-turn-helix domain-containing protein -
  FAY30_RS24610 (FAY30_24610) - 5163823..5164047 (-) 225 WP_149872310.1 hypothetical protein -
  FAY30_RS24615 (FAY30_24615) ssbB 5164031..5164408 (-) 378 WP_149872311.1 single-stranded DNA-binding protein Machinery gene
  FAY30_RS24620 (FAY30_24620) - 5164652..5165083 (+) 432 WP_149872312.1 YwpF-like family protein -
  FAY30_RS24625 (FAY30_24625) - 5165222..5165485 (+) 264 WP_223820846.1 hypothetical protein -
  FAY30_RS24630 (FAY30_24630) - 5165630..5165965 (-) 336 WP_223820847.1 hypothetical protein -
  FAY30_RS24635 (FAY30_24635) fabZ 5166267..5166701 (-) 435 WP_149872313.1 3-hydroxyacyl-ACP dehydratase FabZ -
  FAY30_RS24640 (FAY30_24640) - 5166789..5167112 (-) 324 WP_149872314.1 DNA-directed RNA polymerase subunit beta -
  FAY30_RS24645 (FAY30_24645) - 5167562..5168563 (-) 1002 WP_149872863.1 rod shape-determining protein -
  FAY30_RS24650 (FAY30_24650) spoIIID 5168750..5169022 (-) 273 WP_149872315.1 sporulation transcriptional regulator SpoIIID -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 14172.03 Da        Isoelectric Point: 9.1556

>NTDB_id=360482 FAY30_RS24615 WP_149872311.1 5164031..5164408(-) (ssbB) [Bacillus sp. S3]
MINQVTLVGRLTRDPELNKTPDGTAVTQITVAVNRHFRNHNGEIEADFVQCTIWRKAAENTCQYCRKGSIVGITGRLQTR
YYDNREGKRVYVTEVIADAVRFLSAKPNNSPPEPKKEEVPIGNER

Nucleotide


Download         Length: 378 bp        

>NTDB_id=360482 FAY30_RS24615 WP_149872311.1 5164031..5164408(-) (ssbB) [Bacillus sp. S3]
ATGATCAATCAGGTTACACTTGTCGGCCGATTAACCCGTGATCCCGAGTTAAACAAGACGCCGGATGGGACGGCTGTCAC
CCAAATAACGGTGGCAGTAAACCGCCATTTTCGCAACCATAATGGAGAAATTGAAGCCGATTTCGTTCAATGTACGATAT
GGCGAAAGGCAGCGGAGAATACATGCCAATATTGTCGAAAGGGGTCGATTGTTGGAATTACCGGCAGGCTGCAAACCCGC
TATTATGATAATCGTGAGGGCAAGAGGGTGTACGTCACCGAGGTAATTGCGGATGCGGTTCGCTTCCTGAGTGCCAAACC
GAACAATTCTCCTCCTGAGCCAAAGAAGGAGGAAGTGCCAATTGGAAATGAAAGATGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.486

85.6

0.552
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

84.8

0.488
  ssb Latilactobacillus sakei subsp. sakei 23K

56.604

84.8

0.48
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.363

90.4

0.392
  ssbB/cilA Streptococcus mitis NCTC 12261

40.708

90.4

0.368
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.708

90.4

0.368
  ssbA Streptococcus mutans UA159

39.316

93.6

0.368

Multiple sequence alignment