Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GTW26_RS30970 Genome accession   NZ_CP047643
Coordinates   6567146..6568639 (+) Length   497 a.a.
NCBI ID   WP_003141984.1    Uniprot ID   A0A0H2ZJ12
Organism   Pseudomonas aeruginosa CI27     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6562146..6573639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTW26_RS30940 (GTW26_30865) - 6562267..6563181 (-) 915 WP_003096438.1 fimbrial protein -
  GTW26_RS30945 (GTW26_30870) sutA 6563618..6563935 (-) 318 WP_003096440.1 transcriptional regulator SutA -
  GTW26_RS30950 (GTW26_30875) - 6564013..6564438 (-) 426 WP_003096441.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  GTW26_RS30955 (GTW26_30880) - 6564699..6566027 (-) 1329 WP_003109815.1 ammonium transporter -
  GTW26_RS30960 (GTW26_30885) glnK 6566067..6566405 (-) 339 WP_003096476.1 P-II family nitrogen regulator -
  GTW26_RS30965 (GTW26_30890) - 6566845..6567105 (+) 261 WP_003096478.1 accessory factor UbiK family protein -
  GTW26_RS30970 (GTW26_30895) comM 6567146..6568639 (+) 1494 WP_003141984.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GTW26_RS30975 (GTW26_30900) betT 6568764..6570749 (+) 1986 WP_003096496.1 choline BCCT transporter BetT -
  GTW26_RS30980 (GTW26_30905) pchP 6570792..6571841 (-) 1050 WP_003110458.1 phosphorylcholine phosphatase -
  GTW26_RS30985 (GTW26_30910) - 6571992..6572909 (-) 918 WP_003141986.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53094.00 Da        Isoelectric Point: 7.7678

>NTDB_id=360475 GTW26_RS30970 WP_003141984.1 6567146..6568639(+) (comM) [Pseudomonas aeruginosa CI27]
MSLAIVHSRAQVGVEAPCVSVEAHLANGLPSLTLVGLPETAVRESKDRVRSALLNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPGTTLDGLECLGELALSGAIRPVRGVLPAALAARDARHVLVVPKENAEEASLASGLTVFAVDHL
LEIAGHLSGQAPLLPYQARGLLRAPFPYPDLAEVQGQAAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPALDE
DEALEVAAIHSVASHVPLRHWPQRPFRQPHHSASAPALVGGGSRPQPGEITLAHQGVLFLDELPEFERKVLEVLREPLES
GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQVQRYRGKLSGPLLDRIDLHVSVLRESTSLQPGHGE
TATAEISERVGAARQRQLARQGCANAHLDLQAMHRNCALAEADRRWLEAAGERLELSLRALHRILKVARTLADLERIDAI
ERRHLAEALQYRATTST

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=360475 GTW26_RS30970 WP_003141984.1 6567146..6568639(+) (comM) [Pseudomonas aeruginosa CI27]
ATGTCCCTGGCGATTGTCCACAGCCGAGCCCAGGTCGGCGTCGAAGCCCCCTGCGTCAGCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCTTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGCGTGCGCAGCGCCCTGC
TCAATGCCGGTTTCGACTTCCCCGCGCGGCGCATCACCCTCAACCTCGCCCCCGCCGACCTGCCCAAGGACGGCGGTCGC
TTCGACCTGGCCATCGCACTCGGCATCCTCGCCGCCAGCGGCCAGTTGCCCGGCACCACCCTCGACGGCCTGGAGTGCCT
TGGCGAACTGGCCCTGTCCGGGGCGATCCGGCCAGTGCGAGGCGTATTGCCGGCCGCGCTGGCGGCGCGCGACGCAAGGC
ACGTTCTGGTGGTACCGAAGGAAAATGCCGAAGAGGCCAGCCTGGCCAGCGGGCTGACGGTGTTCGCCGTGGACCACCTG
CTGGAGATCGCCGGACACCTCTCCGGCCAGGCCCCGCTGCTGCCCTACCAGGCCCGCGGCCTGCTCCGCGCGCCCTTCCC
TTATCCAGACCTGGCCGAGGTCCAGGGCCAGGCCGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCGCACAACC
TGTTGCTCAGCGGCCCGCCGGGCACCGGCAAGACCCTCCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGGCGCTCGACGAG
GACGAGGCCCTGGAGGTCGCAGCGATCCATTCGGTGGCCAGCCACGTCCCCCTCAGGCACTGGCCGCAGCGACCGTTCCG
CCAGCCGCACCACTCCGCCTCCGCGCCGGCCCTGGTCGGCGGCGGCAGCCGCCCGCAGCCGGGCGAGATCACCCTGGCGC
ACCAGGGCGTGCTGTTCCTCGACGAACTGCCGGAGTTCGAGCGCAAGGTCCTGGAGGTCCTGCGCGAGCCGCTGGAAAGC
GGCGAGATCGTCATTGCCCGGGCCAACGGCCGGGTACGTTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAATCCCTG
TCCCTGTGGCTACCTCGGCGATCCCAGCGGCCGCTGCCGCTGCACCCCGGAACAGGTCCAGCGCTACCGGGGCAAGCTGT
CCGGACCGCTGCTCGATCGCATCGACCTGCACGTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCAGGACACGGCGAA
ACCGCTACCGCCGAGATCAGCGAACGGGTTGGCGCCGCACGGCAACGGCAACTGGCCCGCCAGGGCTGCGCCAATGCCCA
TCTCGACCTCCAGGCGATGCACCGCAATTGTGCACTCGCCGAAGCGGACCGCCGCTGGCTGGAGGCTGCCGGAGAGCGCC
TGGAACTTTCCTTGCGCGCCTTGCATCGCATACTCAAGGTGGCCCGGACGCTGGCCGACCTGGAGCGCATCGATGCCATC
GAACGCCGGCACCTGGCGGAAGCCCTGCAGTATCGGGCAACGACCTCCACGTGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJ12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.25

99.799

0.561
  comM Haemophilus influenzae Rd KW20

55.268

100

0.559
  comM Vibrio cholerae O1 biovar El Tor strain E7946

55.847

99.799

0.557
  comM Vibrio cholerae strain A1552

55.847

99.799

0.557
  comM Glaesserella parasuis strain SC1401

54.491

100

0.549
  comM Acinetobacter baylyi ADP1

53.614

100

0.537
  comM Legionella pneumophila str. Paris

49.901

100

0.507
  comM Legionella pneumophila strain ERS1305867

49.901

100

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.154

100

0.471
  comM Helicobacter pylori 26695

38.845

100

0.392