Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   DVT08_RS02460 Genome accession   NZ_CP047134
Coordinates   578264..578890 (+) Length   208 a.a.
NCBI ID   WP_004086552.1    Uniprot ID   B0U5N1
Organism   Xylella fastidiosa subsp. multiplex strain IVIA5901     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 573264..583890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVT08_RS02445 (DVT08_002490) - 574477..574938 (-) 462 WP_004086550.1 hypothetical protein -
  DVT08_RS02455 (DVT08_002500) tig 576831..578126 (+) 1296 WP_004086551.1 trigger factor -
  DVT08_RS02460 (DVT08_002505) clpP 578264..578890 (+) 627 WP_004086552.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  DVT08_RS02465 (DVT08_002510) clpX 579018..580298 (+) 1281 WP_004086553.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  DVT08_RS02470 (DVT08_002515) lon 580450..582921 (+) 2472 WP_004086554.1 endopeptidase La -
  DVT08_RS02475 (DVT08_002520) - 583142..583426 (+) 285 WP_004086555.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 22781.04 Da        Isoelectric Point: 4.8632

>NTDB_id=357453 DVT08_RS02460 WP_004086552.1 578264..578890(+) (clpP) [Xylella fastidiosa subsp. multiplex strain IVIA5901]
MDDVTKALNLVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDYMANLIVAQLLFLEAENPEKDINIYINSPGGVVTA
GMAIYDTMQYIKPAVSTICVGQAASMGALLLASGASGKRYALPNSRVMIHQPLGGFQGQATDVDIHAREILALRARLNEI
LAKHTGQSLETIAHDTERDNFKSAVDAQAYGLVDQVFGQRQEELIQSS

Nucleotide


Download         Length: 627 bp        

>NTDB_id=357453 DVT08_RS02460 WP_004086552.1 578264..578890(+) (clpP) [Xylella fastidiosa subsp. multiplex strain IVIA5901]
GTGGATGATGTGACAAAAGCTTTAAATCTAGTGCCGATGGTGGTCGAACAGACTAGCCGGGGGGAGCGTGCTTACGACAT
ATATTCGCGTTTATTAAAGGAACGTCTCATTTTTCTGGTTGGCCCTATTGACGACTACATGGCCAATTTGATAGTGGCGC
AACTCCTTTTCTTGGAAGCGGAAAATCCCGAGAAGGACATTAATATTTACATTAATTCTCCGGGTGGTGTGGTTACTGCA
GGTATGGCCATTTACGACACGATGCAGTACATTAAACCCGCTGTCAGTACTATCTGTGTTGGTCAAGCTGCTTCTATGGG
GGCGTTGTTACTGGCTTCAGGTGCGTCTGGTAAGCGTTATGCTTTGCCGAACTCGCGTGTGATGATCCATCAACCGTTAG
GTGGTTTTCAGGGCCAAGCTACTGACGTCGACATTCATGCGCGTGAGATACTTGCTTTACGTGCGCGTCTAAACGAAATA
TTGGCTAAGCATACGGGACAGTCCTTGGAGACTATTGCTCATGACACTGAGCGTGATAACTTTAAAAGTGCTGTTGATGC
CCAAGCTTATGGTTTGGTAGATCAGGTCTTTGGGCAGCGCCAGGAAGAGTTGATTCAGTCTTCTTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(20-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0U5N1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

67.347

94.231

0.635
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.021

90.385

0.606
  clpP Lactococcus lactis subsp. cremoris KW2

55.263

91.346

0.505
  clpP Streptococcus thermophilus LMG 18311

53.093

93.269

0.495
  clpP Streptococcus thermophilus LMD-9

53.093

93.269

0.495
  clpP Streptococcus pneumoniae TIGR4

53.125

92.308

0.49
  clpP Streptococcus pneumoniae Rx1

53.125

92.308

0.49
  clpP Streptococcus pneumoniae D39

53.125

92.308

0.49
  clpP Streptococcus pneumoniae R6

53.125

92.308

0.49
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

53.684

91.346

0.49
  clpP Streptococcus pyogenes JRS4

52.632

91.346

0.481
  clpP Streptococcus pyogenes MGAS315

52.632

91.346

0.481
  clpP Streptococcus mutans UA159

49.746

94.712

0.471