Detailed information NTG0356744

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: RI02_RS16440
• Genome accession: NZ_CP039020
• Coordinates: 3181518..3182204 (-)
• Length: 228 a.a.
• NCBI ID: WP_026050153.1
• Uniprot ID: -
• Organism: Bacillus altitudinis strain BA06
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3176518..3187204

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RI02_RS16405 (RI02_16495)	fliW	3176654..3177088 (-)	435	WP_017368139.1	flagellar assembly protein FliW	-
RI02_RS16410 (RI02_16500)	-	3177117..3177695 (-)	579	WP_017368140.1	DUF6470 family protein	-
RI02_RS16415 (RI02_16505)	flgL	3177742..3178653 (-)	912	WP_017368141.1	flagellar hook-associated protein FlgL	-
RI02_RS16420 (RI02_16510)	flgK	3178662..3180182 (-)	1521	WP_017368142.1	flagellar hook-associated protein FlgK	-
RI02_RS16425 (RI02_16515)	-	3180198..3180680 (-)	483	WP_008348261.1	flagellar protein FlgN	-
RI02_RS16430 (RI02_16520)	flgM	3180699..3180962 (-)	264	WP_003213252.1	flagellar biosynthesis anti-sigma factor FlgM	-
RI02_RS16435 (RI02_16525)	-	3181042..3181461 (-)	420	WP_017357864.1	TIGR03826 family flagellar region protein	-
RI02_RS16440 (RI02_16530)	comFC	3181518..3182204 (-)	687	WP_026050153.1	amidophosphoribosyltransferase	Machinery gene
RI02_RS16445 (RI02_16535)	-	3182201..3182494 (-)	294	WP_008348267.1	late competence development ComFB family protein	-
RI02_RS16450 (RI02_16540)	comFA	3182559..3183938 (-)	1380	WP_026050154.1	DEAD/DEAH box helicase	Machinery gene
RI02_RS16455 (RI02_16545)	-	3184058..3184900 (-)	843	WP_007499966.1	DegV family protein	-
RI02_RS16460 (RI02_16550)	degU	3185112..3185801 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
RI02_RS16465 (RI02_16555)	degS	3185866..3187041 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 26195.68 Da
• Isoelectric Point: 10.2584

>NTDB_id=356744 RI02_RS16440 WP_026050153.1 3181518..3182204(-) (comFC) [Bacillus altitudinis strain BA06]
MICPICESHFVADFTWKSFLLLNEDRLCVACKNHLMKIQGPTCPKCGRAQSNDQLCQDCSRWNKRRDFAEILVMNRSVYA
YNNFMKDILARFKFRGDTALADLFKKDVQSAFKRSFSIKEPVLVPIPLSKERLKERGFNQSMMLASMIGGPILEPLIKVH
QRKQSKKRKNERLHQQNLFQLRQANPIVPNDIILIDDIYTTGATVYHAAKILKEAGAKSVSSFTLIRS

Nucleotide

• Length: 687 bp

>NTDB_id=356744 RI02_RS16440 WP_026050153.1 3181518..3182204(-) (comFC) [Bacillus altitudinis strain BA06]
TTGATTTGTCCAATTTGTGAGAGCCATTTTGTGGCTGATTTTACATGGAAATCATTCCTACTATTAAATGAAGATCGTTT
ATGTGTAGCATGTAAGAACCACCTGATGAAGATTCAAGGTCCTACTTGTCCCAAATGCGGAAGAGCGCAATCAAATGATC
AATTGTGTCAAGATTGTTCAAGGTGGAATAAACGACGGGATTTTGCTGAGATTCTTGTAATGAATCGGTCTGTTTATGCT
TACAACAACTTTATGAAAGATATTCTAGCTCGATTTAAATTTCGAGGTGATACGGCTTTAGCTGATCTATTTAAAAAAGA
TGTACAGTCAGCGTTTAAACGTTCTTTTTCAATCAAAGAACCGGTGCTTGTCCCAATTCCTTTGAGTAAAGAGAGATTAA
AGGAAAGAGGATTCAATCAGTCAATGATGCTTGCTTCCATGATTGGCGGACCTATATTGGAGCCACTTATAAAAGTACAT
CAAAGGAAGCAGTCTAAGAAAAGAAAAAATGAACGTTTACATCAACAGAATTTGTTCCAATTAAGGCAGGCAAACCCGAT
CGTTCCAAACGATATCATATTAATCGATGATATTTATACAACTGGGGCGACAGTCTATCATGCAGCAAAAATTTTAAAAG
AAGCAGGCGCCAAAAGTGTTTCCTCTTTTACGTTGATTCGTAGTTAA

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (3-59)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	50	100	0.504
comFC/cflB	Streptococcus mitis SK321	39.301	100	0.395
comFC/cflB	Streptococcus mitis NCTC 12261	38.428	100	0.386
comFC/cflB	Streptococcus pneumoniae TIGR4	37.555	100	0.377
comFC/cflB	Streptococcus pneumoniae Rx1	37.555	100	0.377
comFC/cflB	Streptococcus pneumoniae D39	37.555	100	0.377
comFC/cflB	Streptococcus pneumoniae R6	37.555	100	0.377