Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   RI02_RS16460 Genome accession   NZ_CP039020
Coordinates   3185112..3185801 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus altitudinis strain BA06     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3180112..3190801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI02_RS16425 (RI02_16515) - 3180198..3180680 (-) 483 WP_008348261.1 flagellar protein FlgN -
  RI02_RS16430 (RI02_16520) flgM 3180699..3180962 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  RI02_RS16435 (RI02_16525) - 3181042..3181461 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  RI02_RS16440 (RI02_16530) comFC 3181518..3182204 (-) 687 WP_026050153.1 amidophosphoribosyltransferase Machinery gene
  RI02_RS16445 (RI02_16535) - 3182201..3182494 (-) 294 WP_008348267.1 late competence development ComFB family protein -
  RI02_RS16450 (RI02_16540) comFA 3182559..3183938 (-) 1380 WP_026050154.1 DEAD/DEAH box helicase Machinery gene
  RI02_RS16455 (RI02_16545) - 3184058..3184900 (-) 843 WP_007499966.1 DegV family protein -
  RI02_RS16460 (RI02_16550) degU 3185112..3185801 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  RI02_RS16465 (RI02_16555) degS 3185866..3187041 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  RI02_RS16470 (RI02_16560) - 3187263..3187931 (+) 669 WP_008348276.1 YigZ family protein -
  RI02_RS16475 (RI02_16565) - 3187916..3189013 (+) 1098 WP_007499958.1 LCP family protein -
  RI02_RS16480 (RI02_16570) - 3189051..3190118 (-) 1068 WP_007499956.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=356746 RI02_RS16460 WP_008348273.1 3185112..3185801(-) (degU) [Bacillus altitudinis strain BA06]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=356746 RI02_RS16460 WP_008348273.1 3185112..3185801(-) (degU) [Bacillus altitudinis strain BA06]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAATGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment